Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3038 ATGGATGGAAGGTGGAGTGAGGGAAAGAGGATCTTGATGTACAAGGAAGAGGATGAGTGTGAAGAAGAGCAAGAAGATGAAGAAGAAGAAGAAGAGGCCGTACTTTATGGAGAGGATGGAATTAGGAAGAAAAGGGTGGTGGTGACTGATCTATACAGCAAGAGAGGGTCCAAAGCCGGAGGCTCAGCTGTGCCGCCTTCTTGTCAGGTGGAGGGTTGCTATGCTGATCTAAGCGGCGCTAAGGCGTACCACCGGCGGCACAAGGTGTGTGAGCACCATGCCAAGGCTCCTTCCGTACTACTTTCTGAACAACAGCAAAGGTTTTGCCAGCAATGCAGCAGGTTTCATGAACTGTCAGAGTTTGATGACACAAAAAGGAGTTGTAGAAGGCGCTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAATTTCAAGGAGAAGGATTTAATGGATGA 462 0.4848 MDGRWSEGKRILMYKEEDECEEEQEDEEEEEEAVLYGEDGIRKKRVVVTDLYSKRGSKAGGSAVPPSCQVEGCYADLSGAKAYHRRHKVCEHHAKAPSVLLSEQQQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNASEFQGEGFNG* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3038 153 Gene3D - 58 129 IPR036893 GO:0003677|GO:0005634
Lja6g3038 153 SUPERFAMILY SBT domain 66 145 IPR036893 GO:0003677|GO:0005634
Lja6g3038 153 Coils Coil 13 33 - -
Lja6g3038 153 PIRSF SBP 6 153 IPR017238 GO:0003677|GO:0003700|GO:0009908
Lja6g3038 153 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 15 144 - -
Lja6g3038 153 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
Lja6g3038 153 MobiDBLite consensus disorder prediction 134 153 - -
Lja6g3038 153 Pfam SBP domain 68 141 IPR004333 GO:0003677
Lja6g3038 153 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 144 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3038 Lja-Chr6 59184461 59186142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3038 58 145 SBP-box Gene Family AT2G33810 67.778 5.71e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja6g3038 SBP 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3038 - - gmx:100782285 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3038 6 59184461 59186142 Lja6g3038 6 59184461 59186142 ECH
Lja6g3038 6 59184461 59186142 Lja4g3814 4 70648106 70651269 ECH
Lja3g4835 3 90379302 90381019 Lja6g3038 6 59184461 59186142 ECH
Lja3g1290 3 13519987 13521138 Lja6g3038 6 59184461 59186142 ECH
Lja4g3814 4 70648106 70651269 Lja6g3038 6 59184461 59186142 PCT