Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3031 ATGTCTGACCCTGATTCTCCTTCCAACGCTGATCCATTCCTCGAAGAAGAGGAAGAAGAAGAAGAAGAGTATGAAGAGGTTGAAGAAGAAGAAGAAATTGAAGTAGAAGAGGATCATCAACAGGAGGGCCAAGAACAAGAAGCAAATGCTGATGATGACGAAGCAGAAGAACAAGAAGAGATAGAAGAAGAGGTTGAAGTTGAAGAAGAGGAAGTGGAAGAAATCGAGGAGGAGGTGGAGGAGGAGGAAGAGGAGGAGGTAGAGGAGGAGGAAGTGGAAGTGGAAGTGGAAGAGGAACAGGAAGAGGAGGAGGAATTGGAAGAGGAAGAGGAATTGGAAGAAGAGGTGGAAGAGGAAGAGGAAGAGGAGGAGGAAGAAGTGGAAGTGGAAGGGGAAGAGGAAGAGGAAGAGGAGGAGGAAGTGGAAGAGGAACAGGAAGAGGAGGAGGAATTGGAAGAAGAGGTGGAAGAGGAAGAGGAAGTGGAAGTGGAAGTGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGCAGCAGAGGTGGAACAGGAGGGCAAAGGGGCAGTGCCCAATTCTCTACTCGATGCCGACATTGACGACAAAGGGGCTGTGCCAGATTCTCTACCTGAAGCAGTAGTTGAGGTGAAACAGGAGGACAATGGGGCAGTGCCAGATTCTCTACCTGAAGCAATTGAGGTGAAACAGGAGATCAATGGGGCAGTGCCAGATTCTCTACCTGAAGCAGTTGAGGTGAAACAGGAGGACGATGGGGCAGTGCCAGATTCTCTACCTGATGCCAACAATGATGGCAAAGGTTCGAGTCAACTTATGGGGAAAGATAAGAGCTTGGGGCCAGTTTCTTCTGCCGCTGAAAACCTTGAAGTAATGGCACCATCTACTAACCATCACATGGAAGAGAATAATGCCATGCTTAAAGCAGTTGTTCCTTCATGTGAGACACCAACGCTGAAAAAGGAGGGGTTTCACCCAAATCTTGCAATTTCTAGTCATTCAAAATCAAGAGAAAACCTGATTTCTGCTGACCGTGGCAACAGTCATGGATTAGACATCGATGTTAAAAATGCTGGATCACTTATACAGGGGCTCAGAGTGTGCAGTGAACCAGGTAGTAATAGTAAAGCTTACTTATATGGTGTTGAGGACATAGATTCTATGACTATCAAGTCATCTTGTGATGCTGAAAAAGATGATGTTATTGGTCTTCCACCAAGCCATTACTCTGTTGAGGATGCTGATGGTGATCAGAATTCTATGAACAGAGTTTTGCAGTCAGAGATGAAGTCAAGGATTGATGTGAAACAAATGACATCAAGGAGGACTATAAGTCTGTCTCCCAGTGCTGAGATTAAAGATGGAAACAAACGTAGATGTGATTTTTTTGCTAAAGGATGGTGCATCAGGGGTAGTTCTTGTACCTTTCTTCATATAAAGGATGTTGTGAATAATACTGATCGGGAGGCTGAGGTAGACATTGTTGATGCACATCTGAAGCGAGGCTTAAAATTGGAAGAAGGTGTTAAGGACAATGTTCGCACATCAAAGATGAATGAGGAAAAAGCAAGTCCAAGTTGGCATCGATCTCATGAAAATCAGAAGTTTCTGCCAAGAGACAACTTGTTTCCGGAGAGTAGATTTGCCTTTAATGCATCAAACAATTATTTGAGCCCAAACCTTTCCTCATATTCATCCCGTGCAGAGCCTTTTGTCGGTTCATCTAGGGTTTCATCACATTCCTCTGGATATAAATCTAAAATCAGTTCTTATGATTGGGAGCCTTCCGTACCATTTCAACCATCCTTTTTTATTACTTCTATGAATGCATCCATCCCTAGAGACCTTTATGGCCCTGTCCGTGACAGAATTGAGATACCAAATATAGGAGATGGGTCTTTGAAAGCTACCATTTTAACTGAAAAACCAGCTTCATCACAGGTACGAACATACGCTGCTGTAGTTGGGAAACATATGTCTGATCTTAATGAGGACAAAAGCTCTGTGTCTTCTCATAATAGATTTTATGAAAATGAGCCCAACAAAAGTTGTGTTCCTCGTGAAAAAGATTTTCTTGCAACTGAAACAGAGATAACATCAGGAACCTATGAGAACTACCAAAATGGTAAAATAGGCATGGGACAACATACCTTTGGTGTCAAAGATGTTATGGAACCAGAGAAAGAATGGGCTGAGCATGATACTAGACATCATGGTGAAGGATCAAGTCACAAAAAGAGAAGAGTAGAAATGGATAAGAAAATTCATGAAATGGATGTTGACTTTCAAGCGAATGGAAGTATGCAGAAAGAAACAAGGGAAGTGAGATATTTTCGTGCGGCTCTTGTTGATCTTGTGAAAGAGTTGTTAAAACCATCTTGGCATGAGGGCCGTCTCAGCAAGGACTCGCATAATCTGATAGTTAAAAAATCAGTTGACAAGGTCATTAGTACCTTGGAGCCTCACCAGATTCCGACCTCCGTAGATACTGCTAAGAACTATGTGACTTCATGTCGGGGGAAAATTGCAAAGCTGGTCATGGGATATGTCACTAAATATGGCAAATCATGA 2580 0.4302 MSDPDSPSNADPFLEEEEEEEEEYEEVEEEEEIEVEEDHQQEGQEQEANADDDEAEEQEEIEEEVEVEEEEVEEIEEEVEEEEEEEVEEEEVEVEVEEEQEEEEELEEEEELEEEVEEEEEEEEEEVEVEGEEEEEEEEEVEEEQEEEEELEEEVEEEEEVEVEVEEEEEEEEEEEAAEVEQEGKGAVPNSLLDADIDDKGAVPDSLPEAVVEVKQEDNGAVPDSLPEAIEVKQEINGAVPDSLPEAVEVKQEDDGAVPDSLPDANNDGKGSSQLMGKDKSLGPVSSAAENLEVMAPSTNHHMEENNAMLKAVVPSCETPTLKKEGFHPNLAISSHSKSRENLISADRGNSHGLDIDVKNAGSLIQGLRVCSEPGSNSKAYLYGVEDIDSMTIKSSCDAEKDDVIGLPPSHYSVEDADGDQNSMNRVLQSEMKSRIDVKQMTSRRTISLSPSAEIKDGNKRRCDFFAKGWCIRGSSCTFLHIKDVVNNTDREAEVDIVDAHLKRGLKLEEGVKDNVRTSKMNEEKASPSWHRSHENQKFLPRDNLFPESRFAFNASNNYLSPNLSSYSSRAEPFVGSSRVSSHSSGYKSKISSYDWEPSVPFQPSFFITSMNASIPRDLYGPVRDRIEIPNIGDGSLKATILTEKPASSQVRTYAAVVGKHMSDLNEDKSSVSSHNRFYENEPNKSCVPREKDFLATETEITSGTYENYQNGKIGMGQHTFGVKDVMEPEKEWAEHDTRHHGEGSSHKKRRVEMDKKIHEMDVDFQANGSMQKETREVRYFRAALVDLVKELLKPSWHEGRLSKDSHNLIVKKSVDKVISTLEPHQIPTSVDTAKNYVTSCRGKIAKLVMGYVTKYGKS* 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3031 859 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 111 859 - -
Lja6g3031 859 MobiDBLite consensus disorder prediction 237 285 - -
Lja6g3031 859 MobiDBLite consensus disorder prediction 10 180 - -
Lja6g3031 859 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 461 481 IPR000571 GO:0046872
Lja6g3031 859 ProSiteProfiles Zinc finger C3H1-type profile. 457 484 IPR000571 GO:0046872
Lja6g3031 859 MobiDBLite consensus disorder prediction 1 203 - -
Lja6g3031 859 Coils Coil 10 185 - -
Lja6g3031 859 SUPERFAMILY CCCH zinc finger 459 481 IPR036855 GO:0046872
Lja6g3031 859 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 111 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3031 Lja-Chr6 59107379 59111106 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja6g3031 zf-CCCH 7.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3031 - - lja:Lj6g3v2007290.1 1344.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3031 6 59107379 59111106 Lja6g3031 6 59107379 59111106 ECH