Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3028 ATGGCGCCGAGGGATAAGACCAACGCCGTGAAGGTGAGCGGAAACGGAAACGGTAACGGCAACGGCGGCGTTAAGGAGGTGCATTTTAGAGGAGTTAGAAAGAGGCCATGGGGGAGATACGCTGCCGAGATCCGAGATCCCGGCAAGAAGAGCCGCGTCTGGCTCGGAACATTTGACACGGCGGAAGAGGCGGCGCGTGCATACGACACCGCCGCAAGAGAGTTTCGCGGCCCCAAGGCCAAAACCAACTTCCCTTTCCCTTCAGACAATGTCAAGAACCAGAGCCCGAGCCAGAGCAGTACCGTTGAGTCTTCCAGCCGCGACCGTGACGTTGCTGCTGCCGCTGATTCATCGTCTCTTGATCTCAACTTGGCACCTTCCGTTCGGTTTCCTTTCCGTCCCCAGTTCCCGCAGATGCCGGCGGCGAACCAGGTGCTGTTCTTCGACGCGATTCTGCGTGCCGGCATGGTGGGTGGTTCCCCTGCCTCCCAACGCTACGGTTTCGATTTTCACACCTACAATCATCCCGTGGCGGCGAGTGAGATCCAGGCGGTGGCCGGAGCCCAGAGCGACTCAGACTCGTCCTCGGTGATCGATCTGAACCACTATGAAAGCGGTGTTGTTATAAAAGCTGGTGGTAGAAACTTTGATCTCGACCTTAACTACCCTCCAATGGAAGACATGGCTTGA 690 0.5739 MAPRDKTNAVKVSGNGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPFPSDNVKNQSPSQSSTVESSSRDRDVAAAADSSSLDLNLAPSVRFPFRPQFPQMPAANQVLFFDAILRAGMVGGSPASQRYGFDFHTYNHPVAASEIQAVAGAQSDSDSSSVIDLNHYESGVVIKAGGRNFDLDLNYPPMEDMA* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3028 229 MobiDBLite consensus disorder prediction 76 113 - -
Lja6g3028 229 MobiDBLite consensus disorder prediction 86 107 - -
Lja6g3028 229 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Lja6g3028 229 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Lja6g3028 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 91 - -
Lja6g3028 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 90 207 - -
Lja6g3028 229 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Lja6g3028 229 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Lja6g3028 229 MobiDBLite consensus disorder prediction 1 27 - -
Lja6g3028 229 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 90 207 - -
Lja6g3028 229 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 91 - -
Lja6g3028 229 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Lja6g3028 229 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Lja6g3028 229 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Lja6g3028 229 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3028 Lja-Chr6 59067794 59069988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3028 25 189 AP2-EREBP Transcription Factor Family AT3G15210 48.555 3.02e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja6g3028 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3028 K09286 - gmx:100170742 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3028 6 59067794 59069988 Lja6g3028 6 59067794 59069988 ECH
Lja3g3774 3 74422847 74424109 Lja6g3028 6 59067794 59069988 ECH
Lja3g4845 3 90486692 90487297 Lja6g3028 6 59067794 59069988 ECH
Lja3g1228 3 12919513 12920795 Lja6g3028 6 59067794 59069988 ECH