Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3025 ATGGAAGAGAGAGTAGACGAAGAAAGGATCGACATACAGCAGCCATTGCTTGTGAGAAGAGCATCTATAAACAACACTTCCCAGGTCGCCATTGTTGGAGCCAATATATCTCCAATTCAGAGTCTTGATTACGAGATAATTGAGAATGATGTTTTTAAGCAGGACTGGAGATCTCGAACAAAGAGTGAAATATACCAGTACATTGTCCTAAAGTGGACTCTGGTACTTCTTATTGGTGTATTTACAGGGCTAGTTGGCTTCTTTAATAACCTTGCAGTTGAGAACATTTCTGGTTTCAAGCTTTTAGTCACCAACAAGCTGATGCTGAGCAACAATTATCATGAGGCATTTGCAGTGTATGTTGGCAGTAACATTTTGTTAGCGGTTGGTGCTGCAGCATTGTGTGGTTACATTGCCCCTGCAGCAGCTGGGTCTGGCATACCTGAGGTGAAGGCATACCTGAATGGTATAGATGCACATGCTATATTGGCTCCAACCACCTTATTCGTAAAGATATTTGGATCAATTTTAGGGGTTGCTGCAGGATTTGTTGTGGGGAAAGAAGGACCAATGGTACACACTGGAGCTTGCCTTGCGAATTTGCTGGGACAAGGAGGTTCTAAAAAATACAAGCTGACGTGGAAATGGCTGAGATACTTTAAAAATGACAGAGATCGAAGGGATCTCATCACATGCGGTGCAGCTGCAGGGGTTGCCGCTGCGTTTCGTGCCCCTGTTGGCGGCGTCCTTTTCGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTGTGGCGCACTTTCTTCACAACGGCGGTTGTTGCGGTAGTGCTGAGAGGGTTTACACAAATATGTGAGGGAGCTGCTGGGAAATGTGGGCTTTTTGGGAAAGGAGGTCTCATAATGTTTGATGTTAATTCAGCAGATCCCGTGTATAGCACACCTGATCTCGTAGTAGTTGTGTTTCTTGGAGTTATAGGAGGTCTTATGGGAAGCCTTTACAATTACCTTGTGGATAAGGTGGTTCGCACTTACACTAGTATAAACGAGAGAGGCCCCATCTTCAAAATTCTACTTGTCATCATAATTTCCCTTGTCACCTCTTGTATTCGCTTCGGCCTTCCAATATTGGCATCAAATTGCATCCCCTGTCCATCACTGAATAACTGTCCAACCGTAACCGCTGCCCTCTCACAGTGTCCGCCTAACCACTACAATGACCTCACCTCTCTCTTTTTCACCACTAATGATGATGCTATCCGTAACCTCTTCACTGCTGGCAGCCCTGACAACACCACATTTCAGATTTCTAGTCTCGTCATTTTTTTCATCGCAATATACATGCTTGGAGTTGTCACTTACGGTGTTGCCATCCCCTCTGGCCTCTTCATTCCTGTCATACTTGCTGGAGCTTCATATGGGCGTCTTGTGGGGACTCTCTTGAGTCCATTCACTACTCTTGATACCGGCTTGTTTGCCCTCCTTGGAGCTGCATCCTTTCTTGGTGGCACCATGAGAATGACTGTTTCCCTCTGTGTCATACTTCTTGAGCTCACTAATAACCTGCTCATGCTCCCTTTGCTCATGCTTGTTCTCCTCATTTCAAAGACAGTGGCTGATTGTTTCAACAAAGGTGTTTATGATCAGATTGTCAAGAGTAAGGGGCTACCTTTTATGGAGAAACATGCAGAGCCCTACATGAGGCATTTAATTGCTAGTGATGTTGTTTCTGGCCCCTTGTTCACTTTTTCTGGGGTTGAAAAAGTGGGCAACATTATGCATGCTTTGAAGGTCACAGGACATCATGGCTTTCCTGTGGTTGATGAGCCTCCTTTCTCGGATGCTCCTCAGTTGTCTGGGCTGGTTTTGAGGTCTAATCTGCTTGCACTTCTTAAGCACAGGACATTGTTCACAAGGGAGAAGGTCATAACAGAGCCTGCCATTGTGAGAAGGTTAAAGGCAAGTGATTTTGCAAAGCCAGGTTCAGGCAAAGGGATGAAATTGGAGGATTTAGACATTTCAGAAGAGGAGATGGAAATGTTTATTGATCTTCATCCGATTACCAATTCGTCACCGTATACAGTGGTGGAAACAATGTCTCTTGCAAAAGCTGCTGTTCTTTTTAGGGAGCTTGGCCTCAGGCACTTGTTGGTGGTGCCTAAGACACCCGGTAGGGCTCCAATTGTTGGAATCCTGACAAGGCATGATTTCATGGCTGATTATGTCTTGGGACTATTCCCTCACCTCAACCCCCACAAGTAG 2265 0.4543 MEERVDEERIDIQQPLLVRRASINNTSQVAIVGANISPIQSLDYEIIENDVFKQDWRSRTKSEIYQYIVLKWTLVLLIGVFTGLVGFFNNLAVENISGFKLLVTNKLMLSNNYHEAFAVYVGSNILLAVGAAALCGYIAPAAAGSGIPEVKAYLNGIDAHAILAPTTLFVKIFGSILGVAAGFVVGKEGPMVHTGACLANLLGQGGSKKYKLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFTQICEGAAGKCGLFGKGGLIMFDVNSADPVYSTPDLVVVVFLGVIGGLMGSLYNYLVDKVVRTYTSINERGPIFKILLVIIISLVTSCIRFGLPILASNCIPCPSLNNCPTVTAALSQCPPNHYNDLTSLFFTTNDDAIRNLFTAGSPDNTTFQISSLVIFFIAIYMLGVVTYGVAIPSGLFIPVILAGASYGRLVGTLLSPFTTLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKTVADCFNKGVYDQIVKSKGLPFMEKHAEPYMRHLIASDVVSGPLFTFSGVEKVGNIMHALKVTGHHGFPVVDEPPFSDAPQLSGLVLRSNLLALLKHRTLFTREKVITEPAIVRRLKASDFAKPGSGKGMKLEDLDISEEEMEMFIDLHPITNSSPYTVVETMSLAKAAVLFRELGLRHLLVVPKTPGRAPIVGILTRHDFMADYVLGLFPHLNPHK* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3025 754 PRINTS Chloride channel signature 547 561 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja6g3025 754 PRINTS Chloride channel signature 491 507 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja6g3025 754 PRINTS Chloride channel signature 140 157 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja6g3025 754 PRINTS Chloride channel signature 235 254 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja6g3025 754 PRINTS Chloride channel signature 459 479 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja6g3025 754 PRINTS Chloride channel signature 171 190 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja6g3025 754 PRINTS Chloride channel signature 509 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja6g3025 754 Pfam Voltage gated chloride channel 130 541 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja6g3025 754 SUPERFAMILY CBS-domain pair 563 740 IPR046342 -
Lja6g3025 754 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 9 754 - -
Lja6g3025 754 ProSiteProfiles CBS domain profile. 568 638 IPR000644 -
Lja6g3025 754 ProSiteProfiles CBS domain profile. 688 749 IPR000644 -
Lja6g3025 754 SMART cbs_1 692 744 IPR000644 -
Lja6g3025 754 SMART cbs_1 580 633 IPR000644 -
Lja6g3025 754 CDD ClC_6_like 40 560 - -
Lja6g3025 754 PRINTS Plant CLC chloride channel signature 409 425 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja6g3025 754 PRINTS Plant CLC chloride channel signature 45 53 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja6g3025 754 PRINTS Plant CLC chloride channel signature 270 280 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja6g3025 754 PRINTS Plant CLC chloride channel signature 256 264 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja6g3025 754 Pfam CBS domain 690 739 IPR000644 -
Lja6g3025 754 SUPERFAMILY Clc chloride channel 49 562 IPR014743 -
Lja6g3025 754 Gene3D Clc chloride channel 63 560 - -
Lja6g3025 754 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 9 754 - -
Lja6g3025 754 CDD CBS_pair_voltage-gated_CLC_euk_bac 572 739 - -
Lja6g3025 754 Gene3D - 561 741 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3025 Lja-Chr6 59049648 59053061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3025 5 754 Ion Channels AT5G49890 71.863 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3025 K05016 - jre:108988922 1097.8