Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja6g3020 | ATGGGAGTGGATTACTACAAGATTTTGCAGGTTGGCAAGAACGCCACCGATGATGAGTTGAAGAAAGCTTACAGAAAGCTTGCCATGAAATGGCACCCTGATAAGAACCCCACCAATAAGAAAGACGCTGAGACTAAATTCAAACAGATTTCTGAAGCCTACGAGGTTCTAAGTGATCCTCAGAAGAAAGCAATTTATGATCAGTATGGAGAAGAAGGGCTTAAAGGGCAAGTGCCACCTCCAGATGCTGCTGGTGCTGGTGGGACCTCATTCTTCCAAACTGGAGATGGACCAACAACGTTCAGGTTCAATCCCAGAAATGCAGATGACATCTTTGCCGAGTTTTTCGGGTTTTCAAGCCCGTTTGGAGGCATGGGTGGTGGTGGTGGAATGAGGGGTGGGTCTAGGTCCTTTGGTGGAATGTTTGGTGATGACATGTTCAGTTCATTTGGAGAAGGAAGGCCTATGAGTGCACAGGGTCCTCGCAAGGCACCTGCAATAGAAAATAGAGTGCCTTGTAGCCTTGAGGAGCTATATAAGGGGACTACCAAAAAGATGAAGATCTCAAGGGAGATTGCTGATGCAAGCGGGAAAACTTTGCCTGTGGAGGAAATCCTAACCATTGACATCAAACCCGGGTGGAAAAAGGGGACAAAGATCACGTTCCCAGAGAAAGGAAATGAGCAGCCAAACATGATTGCTGCGGATCTTGTGTTTGTTATTGATGAGAAACCTCACAGTGTATTTACAAGAGATGGTCATGATTTGGTTGTCACACAAAGAGTATCACTGGCTGAAGCTCTAGCAGGCTACACTGTCCATCTCACAACACTGGATGGCAGGGCTCTGAGCATTCCCATAAACAATGTGATTCATCCAAGCTATGAAGAGGTGGTCCCCAGGGAAGGCATGCCTATTCCAAAAGATCCTTCAAAGAAGGATCTGAAGATGGGTGTGGATTACTATGAGATTTTGGAGGTTGACCATCATGCAACTGATGAAGAGTTGAAGAAAGCTTACAGAAGACTTGCCATGAAATGGCACCCTGACAAGAATCCAGACAATAAGAATGATGCTGAGACTAAATTCAAACTCATTTCTGAATCCTATGAGGTTCTAAGTGATCCCCAGAAGAGAGCAATTTATGATCGCTATGGAGAAGACAGACTTAAAGGTGGAATGCCATCACCAGATGCTGGTATGGATTCATTCTTCCGAACTGGGGGTGGCCCAACAACGTTCAGGTTCAATCCAAGAGACGCGAATGGCATCTTTGAAGAAGTTTTTGGCTCTTCAAGCCCATTTGGAGGAATGGGAATGGGGATGGGTGGTTGTGGGAGAGGGATGAGGGGAGGCTCGTGGGTGTCAAGGTCCTTTGGTGGACTTTTTGGCAACGACATATTTGCAGAAGGCAGACCTAAGAATCAAGGTCCGCGGCGCAAGGCACCTCCAATCCAAAATACATTACCTTGCAGCCTTGAGGAACTCTATAAGGGAACTACCAAAAAGTTGAAGATCTCAAGGGAAATTGTACATGTAAGCGGGAGAACTTTGCCTGTGCAGGAAATACTAACCATTGACATCCAACCGGGCTGGAAAAAGGGAACAAAAATCACTTTCGCGGAGAAAGGAAATGAGCAGCCAAATGTTATTGCTGCAGATATTGTGTTTATCGTTGATGAGAAACCTCACAATGTATTTACAAGAGATGGTAATGATTTGGTGGTGACACAAAAGATATCTCTTACAGAAGATGAAGCTCTAACTGGCTTCACCTTCCAACTCACAACTCTGGATGGCAGGTGTCTGCCCATTGCCATAAACAATGGGACTGATCCAAACTATGAAAAAGTGATCACTGGGGAAGGTATGCCAATTTCCAAAGATCCTTCAAAGAGGGGTAACCTTAGGATCAAATTCAACATCAAATTTCCCAGCATGGTAGATGCCTGA | 1953 | 0.4521 | MGVDYYKILQVGKNATDDELKKAYRKLAMKWHPDKNPTNKKDAETKFKQISEAYEVLSDPQKKAIYDQYGEEGLKGQVPPPDAAGAGGTSFFQTGDGPTTFRFNPRNADDIFAEFFGFSSPFGGMGGGGGMRGGSRSFGGMFGDDMFSSFGEGRPMSAQGPRKAPAIENRVPCSLEELYKGTTKKMKISREIADASGKTLPVEEILTIDIKPGWKKGTKITFPEKGNEQPNMIAADLVFVIDEKPHSVFTRDGHDLVVTQRVSLAEALAGYTVHLTTLDGRALSIPINNVIHPSYEEVVPREGMPIPKDPSKKDLKMGVDYYEILEVDHHATDEELKKAYRRLAMKWHPDKNPDNKNDAETKFKLISESYEVLSDPQKRAIYDRYGEDRLKGGMPSPDAGMDSFFRTGGGPTTFRFNPRDANGIFEEVFGSSSPFGGMGMGMGGCGRGMRGGSWVSRSFGGLFGNDIFAEGRPKNQGPRRKAPPIQNTLPCSLEELYKGTTKKLKISREIVHVSGRTLPVQEILTIDIQPGWKKGTKITFAEKGNEQPNVIAADIVFIVDEKPHNVFTRDGNDLVVTQKISLTEDEALTGFTFQLTTLDGRCLPIAINNGTDPNYEKVITGEGMPISKDPSKRGNLRIKFNIKFPSMVDA* | 651 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja6g3020 | 650 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 313 | - | - | |
| Lja6g3020 | 650 | PANTHER | DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE | 1 | 313 | - | - | |
| Lja6g3020 | 650 | SUPERFAMILY | Chaperone J-domain | 3 | 131 | IPR036869 | - | |
| Lja6g3020 | 650 | CDD | DnaJ_C | 483 | 646 | - | - | |
| Lja6g3020 | 650 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 317 | 647 | - | - | |
| Lja6g3020 | 650 | Pfam | DnaJ domain | 4 | 67 | IPR001623 | - | |
| Lja6g3020 | 650 | Pfam | DnaJ domain | 320 | 383 | IPR001623 | - | |
| Lja6g3020 | 650 | CDD | DnaJ_C | 167 | 315 | - | - | |
| Lja6g3020 | 650 | ProSiteProfiles | dnaJ domain profile. | 320 | 386 | IPR001623 | - | |
| Lja6g3020 | 650 | PANTHER | DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE | 317 | 647 | - | - | |
| Lja6g3020 | 650 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 479 | 575 | IPR008971 | GO:0006457|GO:0051082 | |
| Lja6g3020 | 650 | Gene3D | - | 484 | 562 | - | - | |
| Lja6g3020 | 650 | Gene3D | - | 166 | 244 | - | - | |
| Lja6g3020 | 650 | SMART | dnaj_3 | 319 | 378 | IPR001623 | - | |
| Lja6g3020 | 650 | SMART | dnaj_3 | 3 | 62 | IPR001623 | - | |
| Lja6g3020 | 650 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 248 | 310 | IPR008971 | GO:0006457|GO:0051082 | |
| Lja6g3020 | 650 | SUPERFAMILY | Chaperone J-domain | 319 | 444 | IPR036869 | - | |
| Lja6g3020 | 650 | CDD | DnaJ | 4 | 59 | IPR001623 | - | |
| Lja6g3020 | 650 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 566 | 647 | IPR008971 | GO:0006457|GO:0051082 | |
| Lja6g3020 | 650 | ProSiteProfiles | dnaJ domain profile. | 4 | 70 | IPR001623 | - | |
| Lja6g3020 | 650 | ProSitePatterns | Nt-dnaJ domain signature. | 47 | 66 | IPR018253 | - | |
| Lja6g3020 | 650 | Gene3D | DnaJ domain | 319 | 438 | IPR036869 | - | |
| Lja6g3020 | 650 | Gene3D | DnaJ domain | 3 | 126 | IPR036869 | - | |
| Lja6g3020 | 650 | CDD | DnaJ | 320 | 375 | IPR001623 | - | |
| Lja6g3020 | 650 | Pfam | DnaJ C terminal domain | 486 | 645 | IPR002939 | - | |
| Lja6g3020 | 650 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 161 | 252 | IPR008971 | GO:0006457|GO:0051082 | |
| Lja6g3020 | 650 | Pfam | DnaJ C terminal domain | 167 | 313 | IPR002939 | - | |
| Lja6g3020 | 650 | ProSitePatterns | Nt-dnaJ domain signature. | 363 | 382 | IPR018253 | - | |
| Lja6g3020 | 650 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Lja6g3020 | 650 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Lja6g3020 | 650 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Lja6g3020 | 650 | PRINTS | DnaJ domain signature | 62 | 81 | IPR001623 | - | |
| Lja6g3020 | 650 | Gene3D | - | 564 | 646 | - | - | |
| Lja6g3020 | 650 | Gene3D | - | 246 | 318 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja6g3020 | Lja-Chr6 | 59002086 | 59011371 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja6g3020 | 5 | 69 | C2H2 Transcription Factor Family | AT1G74250 | 37.681 | 2.00e-09 | 58.9 |
Event-related genes