Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3012 ATGGGAAAGAGGAAGGCAAAGGCGAAGCCAGCTCCGAAGAAACGAATGGATAAGCTTGACACTGTCTTCAGTTGCCCTTTCTGCAATCATGGCTCTAGTGTTGAATGCCGCATTGACATGAAGAACTTGATAGGGGAAGCTTCTTGCGGGATATGCCAAGAGAGCTTTAGCACTAACATCACAGCTTTATCTGAGGCAATAGACATATACAGTGAGTGGATTGATGAATGTGAACGGGTGAACACCGTGGAAGATGATGGTGCTTAG 267 0.4607 MGKRKAKAKPAPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTNITALSEAIDIYSEWIDECERVNTVEDDGA* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3012 88 PANTHER UNCHARACTERIZED 1 88 IPR007808 -
Lja6g3012 88 Gene3D - 16 82 IPR038567 -
Lja6g3012 88 SUPERFAMILY Zinc beta-ribbon 1 81 - -
Lja6g3012 88 Pfam Transcription elongation factor Elf1 like 2 78 IPR007808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3012 Lja-Chr6 58880634 58882378 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja6g3012 Elf1 6.7e-31 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3012 K25829 - jre:108992628 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3012 6 58880634 58882378 Lja6g3012 6 58880634 58882378 ECH
Lja6g3012 6 58880634 58882378 Lja4g3755 4 69594926 69597553 ECH