Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3007 ATGGACCTGCAACATAAAGTGTTTCTTCTTCTTCTGCTGCTTCCTTTCCATGTTCTTCTTATTACAGCACAGACAGCCAGTCAAGACTTTACTGCCCTATCATCCCTCACACAATCTTGGAAGAACAAGCCACCAAATTGGGTAGGCTCGGATCCTTGTGGCGGTAATTGGGACGGAATTCGTTGCTCCAATTCAAGAATTATCGAATTGAAACTTGCAGGCTTGACTATGGAGGGACAGCTCTCTTCAGCAATCCAGTCCCTATCTGAACTAGATACCATTGATCTTTCTTACAACACGGGCTTGACAGGAACAATTCCACGTGAAATTGGGAATTTGAAAAAGCTAAACTCCCTAGCATTGGTTGGTTGTGGTTTAACTGGTCCTATTCCAGATTCAATAGGGTCTCTAAAGCAGCTAACCTTTCTAGCACTGAACTCTAACAAGTTCAATGGAAACATTCCGCGCTCTCTCGGCAATCTCACCAATCTTGATTGGCTAGATCTTACTGATAACCAACTTGAAGGATCTATTCCTGTCTCTGATGACCAAGGACCAGGTCTTGACATGCTCCTTAATACCCAGCACTTTCATTTGGGGAACAATAAGCTCAATGGTACAATACCAAGAAAACTTTTCAGCTCCAGTATGCACCTCAAACATGTGCTTTTTGACAGCAATAATCTAACTGGTGGTATTCCTAGCACCCTTGCTCTTGTGAGCACAGTGGAGGTGGTGCGCTTCGATAGGAATAAATTAAGCGGGCCAGTGCCTTCAAACTTGAACGATCTTAAAGATCTTAGTGAGCTCTATTTATCTCACAATGGACTGAATGGCTCTCTGCCGGATCTTACTGGATTGAATAAACTAACCTATGTGGATCTAAGCTACAATAATTTCAACTCTTCTTCTGATATTCCGTTATGGGTTTCAAGTCTGCCAGAATTGACAACAGTGATACTAAAGGTTAACCGGCTCAGTGGCACATTGAACCTTACCAATAGCCCCAGCAAGAGTCTGCAACTCATTGATTTGGAGAATAATCTGATAACGGATCTCGAGCCAAGAACCGACCAATTTAGTTTTGACTTGATACTGATTGACAATGGAATTTGCCGCGAAAATGGAGCCTCTGAACTGAGTTACTGCAAGGTGTCCCAAATCGTTCCCTCATATGCAACACCATCAAGTAATTGTTTACCTTCACCATGCAGTGACAACCAGATTGCCAGCCCTAACTGTAAATGTGCATTTCCCTATACTGGAGTTCTGGAATCCAGAGCTTTTAGCTTCTCAAACTACAGTAACACAAGTTACTACAAGGAGATTGAGCAGACTCTGATGGTTTCTTTTCAAGAACACAAGATGGCAGTGGATTCAGTTTCTCTCAGCAATCCCAGGAGGAATTCATCTACTGATAATTTTCAGTTGACTCTGAATGTCTTCCCATCTCAGTCTGATCGTTTCAATACAACTGGAGTTTTGAGTGTTGCTTTTCTGCTAAGCAACCAGATTTACAAACCCCCAGAGTACTTCATCCCTTACATCTTCAGTGGTCTTAGTTATCAGCACTTTGGAGGAGAGAGCAAAGGATCAAGCTCATCAAATACAGGGGTAATTGTTGGTGCAGTTCTTGCTGTATTGGTATTTCTTGTACTAGCACTCCTTGCAGGGATATATGCCATCCGCCAAAAAAGAAGAGCAAAAAGATCTGGAGGGTCAAACCCTTTTGCAAATTGGGAACAGAACAAGAATAGTGGCACTGCTCCTCAGCTGAAAGGAGCAAGGTGGTTTTCTTTTGAAGAGATAAGGAAATACACCAACAACTTCTCAGAAGCCAATAATATTGGATCTGGGGGCTATGGAAAGGTTTATCAAGGTACTCTTCCCTCTGGGGAGTTGGTTGCCATCAAACGGGCAGGAAAAGAATCTATGCAAGGTGCTGTAGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCATCATAAGAATCTCGTTAGTCTTGTGGGCTTCAATTTTGAGAAGGGTGAACAAATGCTCGTGTATGAGTACATTCCAAATGGCACTGTCATGGATAGTCTCTCAGGAAATTCAGGGATATTGATGGATTGGATACGAAGGCTGAAAGTAACACTCGGTGCCGCAAGGGGTCTGTCCTATCTACATGAACTTGCTAACCCACCAATCATACACAGGGACATAAAATCAAGCAATATCCTACTTGATGATCACCTCAATGCTAAAGTTGCAGATTTTGGTCTCTCCAAACTTCTTGTTGATAGTGAAAGAGGCCATGTCACTACTCAAGTCAAAGGGACAATGGGGTACTTGGATCCTGAATATTACATGACCCAGCAGTTGACTGAAAAGAGTGATGTATACAGCTTTGGAGTGTTTATGCTAGAACTAGCAACAGCAAGAAGACCAATAGAGCACGGAAAGTATATTGTAAGAGAGGTAATGAGGGTCATGGATACATCTAAAGATTTATACAACCTTCAATCCATAATAGATCCAACTTTAATGAAAGGGACAAGCCCAAAAGGTCTAGAAAGGTTTGTGGCACTGGCAATGAGGTGTGTCAAAGAATATGCAGCTGAGAGACCTACAATGGCTGAGGCTGTAAAAGAGATTGAGAACATAATTGCGCTTACTGGAGAGAACCCCAATGGTGAATCAGCTTCAAATACAGAAACTTATGAGGAAGCAGGCCAGGGAAAACATCCTTATGTCACAGAAGAATTTGAATATAGTGGAATTTTTCCAACAACAAAGGTAGAACCTCAATGA 2793 0.4211 MDLQHKVFLLLLLLPFHVLLITAQTASQDFTALSSLTQSWKNKPPNWVGSDPCGGNWDGIRCSNSRIIELKLAGLTMEGQLSSAIQSLSELDTIDLSYNTGLTGTIPREIGNLKKLNSLALVGCGLTGPIPDSIGSLKQLTFLALNSNKFNGNIPRSLGNLTNLDWLDLTDNQLEGSIPVSDDQGPGLDMLLNTQHFHLGNNKLNGTIPRKLFSSSMHLKHVLFDSNNLTGGIPSTLALVSTVEVVRFDRNKLSGPVPSNLNDLKDLSELYLSHNGLNGSLPDLTGLNKLTYVDLSYNNFNSSSDIPLWVSSLPELTTVILKVNRLSGTLNLTNSPSKSLQLIDLENNLITDLEPRTDQFSFDLILIDNGICRENGASELSYCKVSQIVPSYATPSSNCLPSPCSDNQIASPNCKCAFPYTGVLESRAFSFSNYSNTSYYKEIEQTLMVSFQEHKMAVDSVSLSNPRRNSSTDNFQLTLNVFPSQSDRFNTTGVLSVAFLLSNQIYKPPEYFIPYIFSGLSYQHFGGESKGSSSSNTGVIVGAVLAVLVFLVLALLAGIYAIRQKRRAKRSGGSNPFANWEQNKNSGTAPQLKGARWFSFEEIRKYTNNFSEANNIGSGGYGKVYQGTLPSGELVAIKRAGKESMQGAVEFKTEIELLSRVHHKNLVSLVGFNFEKGEQMLVYEYIPNGTVMDSLSGNSGILMDWIRRLKVTLGAARGLSYLHELANPPIIHRDIKSSNILLDDHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVFMLELATARRPIEHGKYIVREVMRVMDTSKDLYNLQSIIDPTLMKGTSPKGLERFVALAMRCVKEYAAERPTMAEAVKEIENIIALTGENPNGESASNTETYEEAGQGKHPYVTEEFEYSGIFPTTKVEPQ* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3007 930 SMART serkin_6 610 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3007 930 Gene3D Ribonuclease Inhibitor 23 183 IPR032675 -
Lja6g3007 930 ProSiteProfiles Leucine-rich repeat profile. 266 288 IPR001611 GO:0005515
Lja6g3007 930 ProSiteProfiles Protein kinase domain profile. 610 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3007 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 730 742 IPR008271 GO:0004672|GO:0006468
Lja6g3007 930 Pfam Protein kinase domain 611 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3007 930 MobiDBLite consensus disorder prediction 575 590 - -
Lja6g3007 930 ProSitePatterns Protein kinases ATP-binding region signature. 616 642 IPR017441 GO:0005524
Lja6g3007 930 PANTHER RECEPTOR-LIKE PROTEIN 55 2 913 - -
Lja6g3007 930 Gene3D Phosphorylase Kinase; domain 1 580 685 - -
Lja6g3007 930 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 2 913 - -
Lja6g3007 930 SUPERFAMILY Protein kinase-like (PK-like) 589 878 IPR011009 -
Lja6g3007 930 SUPERFAMILY L domain-like 37 389 - -
Lja6g3007 930 Gene3D Transferase(Phosphotransferase) domain 1 686 902 - -
Lja6g3007 930 MobiDBLite consensus disorder prediction 570 590 - -
Lja6g3007 930 CDD STKc_IRAK 616 882 - -
Lja6g3007 930 Gene3D Ribonuclease Inhibitor 184 409 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3007 Lja-Chr6 58850274 58856791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3007 9 930 Receptor kinase-like Gene Family AT5G49760 52.526 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Lja6g3007 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3007 - - mtr:MTR_2g014960 1374.38