Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3005 ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCCAAGCCCTGCAACCCTCACCACCAATGGCAGCATCATGACATCAACTCCTCTCTCATCTCAACTGGTTGCCACAGATCAACCCCTTACACTTCAGGTTGTGAGGAGAGGAGTCCTGAACCAAAGCCTAGGTGGAACCCAAAGCCGGAACAGATTCGGATTCTTGAAGCAATATTCAACTCTGGGATGGTGAATCCTCCAAGGGATGAGATAAGGAAGATCAGGGCACAGTTGCAAGAGTATGGCCAAGTGGGTGATGCTAATGTCTTCTACTGGTTCCAGAACCGCAAATCAAGGAGCAAGCACAAGCTCCGCCATCTCCAAAATGCAAAGAACCACAACCTCAACCCGAACAATGAACAACCGCCACAAAACCCTCCATCTCAGCACCCTCAAATCACTGCACCTTCATCATCCTCATCTTCTTCCTCGGAGAAATCTTCCCCAAAAGAACTCTTACCACCACCACCCAAGTTCTCCATAGGGTTCTCTAACGTCACCGATGTGGTGCCCAACTCCCCCACCGCCTCGGTGAACCAAACCTATTTTCATTCTCACAATGACACCACTACCCTTCTTCCACCACCACCACCACCTTCTCCAACACCTGCCGAGTCTTTCTTCTTCCCAGTGCAACATCATGCTACCAACACCTTAACATCACAAGGGTTTTGCTTCTCTGAGCTTTCCAATGTGGTTCAAACTCAACCACACAGCAGTCAACACAACGTTGGTCCTCGTGCTAGTCTTTTGTTTGGTGAGTTTATGAGCCATAGTGGTGGTGCTGCTGCCTCAAAGAAAGATCATCAAGATCATGACAAGTCCTTGAAAATTATGCACCAATCTCCTCAGCTTAATTTCTGTTTCCCTCCCACAACTGCTCCTCCTACAACTACTGTTGTAACTCCTACCACTACCACCGCAGTTCCTGTTTCATCCCTCATGACTTCTCATGTTCAAGGAACTGCCGATCCAGGTGTTACGGCGAGACCAACGGTGTTCATCAACGGTGTGGCGTTCGAGGTAGCGGCGGGACCTTTCAACGTGCGTGAGGCGTTTGGGGATGATGCTGTTCTCATCCATGCTACTGGTCAACCAGTTTTAACCAACCAATGGGGTGTCACCGTCCAATCACTCCACCATGGAGCTTCTTATTATCTGGTTATATAA 1209 0.4872 MASSNRHWPSMFKSKPCNPHHQWQHHDINSSLISTGCHRSTPYTSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNAKNHNLNPNNEQPPQNPPSQHPQITAPSSSSSSSSEKSSPKELLPPPPKFSIGFSNVTDVVPNSPTASVNQTYFHSHNDTTTLLPPPPPPSPTPAESFFFPVQHHATNTLTSQGFCFSELSNVVQTQPHSSQHNVGPRASLLFGEFMSHSGGAAASKKDHQDHDKSLKIMHQSPQLNFCFPPTTAPPTTTVVTPTTTTAVPVSSLMTSHVQGTADPGVTARPTVFINGVAFEVAAGPFNVREAFGDDAVLIHATGQPVLTNQWGVTVQSLHHGASYYLVI* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3005 402 MobiDBLite consensus disorder prediction 39 62 - -
Lja6g3005 402 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Lja6g3005 402 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 401 IPR044557 GO:0003700|GO:0050793
Lja6g3005 402 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Lja6g3005 402 CDD homeodomain 54 116 IPR001356 GO:0003677
Lja6g3005 402 Gene3D - 55 121 - -
Lja6g3005 402 MobiDBLite consensus disorder prediction 125 172 - -
Lja6g3005 402 SUPERFAMILY Homeodomain-like 50 119 IPR009057 -
Lja6g3005 402 SMART HOX_1 53 120 IPR001356 GO:0003677
Lja6g3005 402 MobiDBLite consensus disorder prediction 144 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3005 Lja-Chr6 58833711 58836700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3005 218 401 Wox Gene Family AT5G45980 31.980 9.19e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja6g3005 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3005 - - lja:Lj6g3v2006250.1 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3005 6 58833711 58836700 Lja6g3005 6 58833711 58836700 ECH