Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3004 ATGGTTTTGATTTCTCAATCCCAAACAGAGTTACCCTTAAACGAGAATGATTCACAGGATATGGTCATATACCAAGTTCTCAATGAAGCCAGTGCTCTGAGCAACACTTTTCAGAATCAGAGGCAGCAGCACCAAGGCTTAGAAGCCACAAGGAGCATCGCCAAGAAGCATTACAGAGGGGTGCGCCGCCGCCCCTGGGGGAAGTATGCGGCGGAGATTCGTGACTCGGCACGCCATGGAGCGAGGGTGTGGCTTGGCACGTTCCAAACTGCTGAAGAAGCTGCCATGGCTTATGACAGAGCAGCTTTCAGGATGAGAGGTTCCAAGGCGTTGCTCAATTTTCCAGCTGAAGTTGTTGCTGCTGCTGCTGCTGCTGCATCTTCCACGAAGATGGAGTTGAAGAAATTGAATAGCAATCATGATTCTGAATCAAGTGCTAGCAGCTCATGCATTTCCAATTCCAATTCAAATTCCAATTCCAATTGGGTGAATAGTACTCAGTTTGAAAGCACGAGTAGCACTGGAAGCTAA 531 0.4802 MVLISQSQTELPLNENDSQDMVIYQVLNEASALSNTFQNQRQQHQGLEATRSIAKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFQTAEEAAMAYDRAAFRMRGSKALLNFPAEVVAAAAAAASSTKMELKKLNSNHDSESSASSSCISNSNSNSNSNWVNSTQFESTSSTGS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3004 176 MobiDBLite consensus disorder prediction 135 176 - -
Lja6g3004 176 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 6 135 - -
Lja6g3004 176 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Lja6g3004 176 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Lja6g3004 176 SUPERFAMILY DNA-binding domain 57 117 IPR016177 GO:0003677
Lja6g3004 176 ProSiteProfiles AP2/ERF domain profile. 57 115 IPR001471 GO:0003700|GO:0006355
Lja6g3004 176 MobiDBLite consensus disorder prediction 140 176 - -
Lja6g3004 176 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Lja6g3004 176 CDD AP2 56 116 IPR001471 GO:0003700|GO:0006355
Lja6g3004 176 SMART rav1_2 57 121 IPR001471 GO:0003700|GO:0006355
Lja6g3004 176 Gene3D AP2/ERF domain 56 118 IPR036955 GO:0003700|GO:0006355
Lja6g3004 176 PANTHER DNA-BINDING DOMAIN 6 135 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3004 Lja-Chr6 58816407 58817485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3004 4 118 AP2-EREBP Transcription Factor Family AT4G17500 48.276 1.21e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja6g3004 AP2 4.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3004 K13433 - gmx:100775316 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3004 6 58816407 58817485 Lja6g3004 6 58816407 58817485 ECH