Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3003 ATGGATATCCAAAGTAATAATACTAATTGCAATGCAAGTTCTGACGGGATTCTTGAGAATGTTTGGGCTCAAATTAGAGCAGGTGATGCAGCTGAATCTTCTAACTCATGGGAAGAACTGCCTAATCTTGATGGAAGAGATGGTTCTATGGAAATTCTGCAAAGGCTTCCAAGCTTAGGTAGATGGATATCAATGGGAGCTGAATTCTGGGAAGAAGTTTTAGATGGTATTCAAGTTCTACCTAGTGCAAGCAATATTATAGACGATTCGGGAAAGAAAAATTTGGAAGTTGCTAACACTTCCAATTTAAAGGTAGAAGAAAAAGTGAGAACAGAGAAGGTGGTTGAAAAACACTACAGGGGAGTGAGGAGAAGGCCATGGGGAAAATATGCTGCTGAAATTAGAGATTCATCCAAGAAAGGTGCAAGAGTTTGGCTTGGGACATTTGATACAGCTGAAGAAGCAGCTTTGGCTTATGATAAAGCTGCTTTGAGAATTAGAGGTCCAAAGGCACACCTCAATTTCCCACTTGAGACAGTAATTGATCTTACAACCTGTGCTTCTAGAGCTTGTGAAATTTATTGTACATGCACTGGGAAACAAGAAAAAAGGAAGAGAGGATCAGGGGATGGGGAAGAATTTGATGATATCATGAATGAACAGCCAGCAGCAAAAAAGATGGCTGGTTGGGAGAACATGTTTGGAAATGAACTAGATGTTTTGGTATTTCAGGACCTAGGAAATTTTAGCAAGGTCAAGCACAACTACTCCTTAAGCATCTTGTCTACGTTCGATCTTTGA 801 0.3995 MDIQSNNTNCNASSDGILENVWAQIRAGDAAESSNSWEELPNLDGRDGSMEILQRLPSLGRWISMGAEFWEEVLDGIQVLPSASNIIDDSGKKNLEVANTSNLKVEEKVRTEKVVEKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLETVIDLTTCASRACEIYCTCTGKQEKRKRGSGDGEEFDDIMNEQPAAKKMAGWENMFGNELDVLVFQDLGNFSKVKHNYSLSILSTFDL* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3003 266 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Lja6g3003 266 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 248 - -
Lja6g3003 266 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Lja6g3003 266 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Lja6g3003 266 SUPERFAMILY DNA-binding domain 118 178 IPR016177 GO:0003677
Lja6g3003 266 Gene3D AP2/ERF domain 117 178 IPR036955 GO:0003700|GO:0006355
Lja6g3003 266 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Lja6g3003 266 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 18 248 - -
Lja6g3003 266 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
Lja6g3003 266 Pfam AP2 domain 118 168 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3003 Lja-Chr6 58814381 58816352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3003 17 181 AP2-EREBP Transcription Factor Family AT4G18450 48.571 1.31e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja6g3003 AP2 3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3003 - - gmx:112999553 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3003 6 58814381 58816352 Lja6g3003 6 58814381 58816352 ECH