Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2999 ATGCATTGCCCTCCATCTATTCCTCAAGCACTTGCAACAATTTGGCTATTCTTTTATTTACTCATCTCCTCTGTTCTCGTTAATGGTAACCGAGATGAGGCTACGGCTGCAAACAACAAAGTTATATCTATTGGGGCTATCATTCATACTAACTCTCGTATTGGGAAAGAACAGCAAGTAGCCATGGACATTGCAGCTCAGAGTTACAATATCACTTCAAAGAACTACAAGCTAGCTCTCTATTTTCAAAACTCCACCAAGGATCCCTTCAGAGCCACCACTTTTGCTGAAGAATTGCAAAAGATGCAAGTGATTATAGGGATGCACACATGGCCAGAAGCAGCTCTAATGGCTGAAATAGGAAACCAAGCTCAAGTTCCTACCATATCCTTCGTGGAACCTGCCATTACCCCGCCGCTGATGACAGTTCGATGGCCTTATTTGGTGAGACTGGCTAACAATGGCACAGCATTTGTGAAATGCATAGCAAGTATAGTGCAAGCTCATAGCTGGCAGAAAGTAGTAGCTATATATGAAGATGACGGGTATGGTGGAGATTATGGGATGCTGGCACTGCTATCTGAGGCCCTTCAGGATGTGGGTTCAGGGATTGAATACCGCTTAGCTCTTCCACCCATTTCTTCTCTGCAGGATCCAGGAGAGCTAGTACATGAAGAGATGCTCAAGTTAAAGCACACACAATCTAGGGTGTTCATTGTGCTTCAATCATCATTAGAAATGGCCATTCATTTGTTCAAAGAAGCTTCAACAATGGGGCTTGTGGACAAAGAATCAGCTTGGATACTCCCAGAGAGCATAACTAATTTGCTGGACTCACTGAATAAGACAGCAATTTCCCATATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCCGAAAGAAGCAAGGAGTATCAAGATTTTGAGGCTCAGTTCCGGAGGACTTTTGGGTCCAAGAATCCAGAGGAAGATAACCGCTATCCAGGAGTTCATGCCCTGCAAGCATATGACAGCATCAAAATTGTCTCACAAGCAGTCAACAGAATTACCAGTAGAAACAATACCAGTCCAAAGGCTTTACTAACAGAAATACAGTCAAGCAATTTCCTTGGCTTAAGTGGCCAAATTCAATTTGAAGCTGGGAAACTTTTGCAGAATCCTGTCTTCAGGATAGTGAACGTCGTTGGGAAAAGTTACAAGGAATTATGCTTCTGGACTCAACAACATGGTTTCAACACAAGCCTCCATAAAGGACAAGGTGGAAATGGTGCTGCAGGAAATACAAATTGTTTCAGGGGTGTACGTTGGCCGGGGAATTTGGACCGGGATCCGAAGGGATGGAACATGCCTACTGAACAAAATCCATTGAGAATCGCGGTCCGAAGCAGAACCTCATTTTCCAAGTTTGTCAAGGTTGAGTATGGTCAGGACCGAACTCCTGTAAAATATAGTGGATTCTGCATTGAAATTTTTGAGCATGTAGTCAAACTTTTGGGGTACCATTTGCCATTTAACTACACTCCCATTGATGGAACCTATAACGATTTGGTCTGGCTTGTCTATAACAAGACATATGATGCTGTTGTTGGGGACATGACCATACTAGAGGAAAGATTGCAGTATGTGGATTTCACGGTGCCATATGCAGAATCCGGATTGTCAATGATAGTTCCAGCAAAGTCAGAAGCATCAGCATTGATGTTTATGAGGCCCTTTACCTGGGAATTGTGGATGGTTACAGGTGCAATCCTAATTTATACCATGTTAGTAGTTTGGTTGCTTGAGCGAGAACCCAATCCAGAGTTTCAGGGCAATTGGAAGCGACAGATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTCTGTTCTTCGCGCATAGAGAAAAAATGCACAGCACCTTAACTCGAGTGGTAATGGTCTCATGGCTTTTTCTAGTTTTGATTCTCAACTCAAGCTACACTGCTAGTCTTTCTTCATTGCTCACAGTTAAACAACTACAACCAACTGTCACAGACATTGAGTGGCTTAAGAGGAACAACATGAAAGTTGGCTGTGATGGTGACTCATTTGTCAGATTGTTCCTAGAGAAAGTAGAAAGATTCAAGCCAGAGAACATCATAAACATTACTAATGAGTACAAGTATGATGATGCACTCGCAAACAACAGCATAGCAGCTGCCTTTCTTGAGCTCCCATATGAAAAAGTATTCATCAGTGAGTACTGCAAGAGATACACTGGCTCCACCCCTAGAACAAGATTCGGAGGATTAGGCTTTATGTTCCAAAAAGGCTCGCCGCTCGCCAGAGATGTTTCTAAAGCTATATTGCATCTCTCAGAAAAAGCAGAGCTAAAGAGACTGGAAGAAAAATGGTTGATTACCTCCCAGGATTGCTCGAACAACATGACATCTTCTGACGACAATACGGATAGTTTGAAGCTTAGAAGCTTATGGGTTCTCTTTGTCATCTCTGCTGCCACTTCCACCATTTGTCTGCTACTATCAACTCCCAGGATGTATAGCAGAAAGCTCAATAATTCAAGGGAGGCACAGGATGTAACTGATTGTTCTTCGAGAGCGGATCATGAAAGCATTGCTGATACCCCGGAGCATCAACAGGAAACGGCTTCTCTAGTACCTAAAATCTTAATGCTACCTTCTCCACCTGAAGAGGTACAGATGACAACACGTGATGGAAGACCCTCGGAATCACATAGACTTCAAAATGCTTCCCATATCAGACACTTTAGTCACCCATATTAG 2760 0.4308 MHCPPSIPQALATIWLFFYLLISSVLVNGNRDEATAANNKVISIGAIIHTNSRIGKEQQVAMDIAAQSYNITSKNYKLALYFQNSTKDPFRATTFAEELQKMQVIIGMHTWPEAALMAEIGNQAQVPTISFVEPAITPPLMTVRWPYLVRLANNGTAFVKCIASIVQAHSWQKVVAIYEDDGYGGDYGMLALLSEALQDVGSGIEYRLALPPISSLQDPGELVHEEMLKLKHTQSRVFIVLQSSLEMAIHLFKEASTMGLVDKESAWILPESITNLLDSLNKTAISHMEGALGIKTYYSERSKEYQDFEAQFRRTFGSKNPEEDNRYPGVHALQAYDSIKIVSQAVNRITSRNNTSPKALLTEIQSSNFLGLSGQIQFEAGKLLQNPVFRIVNVVGKSYKELCFWTQQHGFNTSLHKGQGGNGAAGNTNCFRGVRWPGNLDRDPKGWNMPTEQNPLRIAVRSRTSFSKFVKVEYGQDRTPVKYSGFCIEIFEHVVKLLGYHLPFNYTPIDGTYNDLVWLVYNKTYDAVVGDMTILEERLQYVDFTVPYAESGLSMIVPAKSEASALMFMRPFTWELWMVTGAILIYTMLVVWLLEREPNPEFQGNWKRQISTALWFTFSSLFFAHREKMHSTLTRVVMVSWLFLVLILNSSYTASLSSLLTVKQLQPTVTDIEWLKRNNMKVGCDGDSFVRLFLEKVERFKPENIINITNEYKYDDALANNSIAAAFLELPYEKVFISEYCKRYTGSTPRTRFGGLGFMFQKGSPLARDVSKAILHLSEKAELKRLEEKWLITSQDCSNNMTSSDDNTDSLKLRSLWVLFVISAATSTICLLLSTPRMYSRKLNNSREAQDVTDCSSRADHESIADTPEHQQETASLVPKILMLPSPPEEVQMTTRDGRPSESHRLQNASHIRHFSHPY* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2999 919 Pfam Receptor family ligand binding region 59 395 IPR001828 -
Lja6g2999 919 Gene3D - 157 326 - -
Lja6g2999 919 CDD GluR_Plant 454 791 - -
Lja6g2999 919 CDD PBP1_GABAb_receptor_plant 43 415 IPR044440 -
Lja6g2999 919 SMART GluR_14 455 793 IPR001320 GO:0015276|GO:0016020
Lja6g2999 919 SUPERFAMILY Periplasmic binding protein-like I 36 447 IPR028082 -
Lja6g2999 919 SUPERFAMILY Periplasmic binding protein-like II 436 791 - -
Lja6g2999 919 PANTHER GLUTAMATE RECEPTOR 3.4 837 881 - -
Lja6g2999 919 MobiDBLite consensus disorder prediction 853 868 - -
Lja6g2999 919 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 835 - -
Lja6g2999 919 Gene3D - 565 699 - -
Lja6g2999 919 MobiDBLite consensus disorder prediction 895 909 - -
Lja6g2999 919 Pfam Ligand-gated ion channel 792 825 IPR001320 GO:0015276|GO:0016020
Lja6g2999 919 MobiDBLite consensus disorder prediction 889 919 - -
Lja6g2999 919 Pfam Bacterial extracellular solute-binding proteins, family 3 482 791 IPR001638 -
Lja6g2999 919 Gene3D - 330 454 - -
Lja6g2999 919 Gene3D - 717 798 - -
Lja6g2999 919 PIRSF IGluLR_plant 9 917 IPR017103 -
Lja6g2999 919 PANTHER GLUTAMATE RECEPTOR 3.4 22 835 - -
Lja6g2999 919 MobiDBLite consensus disorder prediction 845 873 - -
Lja6g2999 919 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 837 881 - -
Lja6g2999 919 Gene3D - 455 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2999 Lja-Chr6 58777364 58780970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2999 42 833 Ion Channels AT2G29120 33.213 1.76e-142 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2999 - - gmx:100818619 1334.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2999 6 58777364 58780970 Lja6g2999 6 58777364 58780970 ECH