Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2998 ATGAAGTTTTATGCTCAAACTTCGAAAGCAATTACAAACCTCTTGGTTTGGCTTCCTCTAATCACACTTATCCTATGCCAGTGCCTCATAGGAGCCAAAGCTGCCAATAGTTCCCAAACTTCAAGTGTTGGTGTGGTCATTGATGTCAATTCTGAGATGGGAAAACAACAGAAAAGAGCCATGCAGATTGCAGCTCAAAATTTCAATAATAATTCAAAGACTCAGAACATAACCCTTTTCTTCCGTGACTCTGCAGGAAACCCTTTACAAGCAGCTTCAGCTGCTGAAGAATTAATTACCAAGAAAGTTAAAGTCATTATTGGAATGGAGACATGGCAGGAAGCAGCTCTAGTGGCTGACCTTGGAGCCAAAGCTCAGGTCCCAATCATTTCATTTTCTTCTCCCCCGGTAGTCCCTCCATTGATGCAACTTCGTTGGCCTTTCTTGATTCAAATGGCGAAAAACGAGGCTACACACATGAACTGCATAGCAGATATCATCCATGAGTTCAACTGGCCCAAAGTTATAGCTATATATGAAGACAACCCTTATAGCAGCGATTCTGGAATGTTAAGCCTCTTCTCTGAGGCTCTCCAAGAGGTTAACTCGGAGATTGAGTACCGTTTAGTCCTTCCACCATTCACTTCTTTGTCTGATCCAAAAGGGGTTGTTCTTGATGAATTGCTGAAGCTGTTGCCTCTGAAATCTCGCATTTTCGTTGTACTTCAAGCATCATTCCCTATGGTGACTCATTTGTTTAGAGAAGCTAAAAAAATTGGATTCTTGGAGAAAGGGACAGCTTGGATAATCAATGAGGGGATTGCAAGCATGTTGGACTCTTTCAATAAATCTGTTTTATCCTCTATGGAAGGAACTCTGGGGATTCAAACCTACTATTCTAAAAGTTCAAGTGCTTACACTCAGTTGCAGGAAAATTTCCTAGCTGAGCATTCAGAAACAGCTAGTTCTAAACCAGGTTCAGATGCCCTAAGAGCTTATGATAGCATTACCGTTGTCACAAAGGCCTTAGAGAAAATAAGTACTAATTCTAGTAGCTCTAAGGTGTTCTTGGAGGAAATGTTATCTTCCAACTTTAATGGCTTAAGTGGTAATATAACATTCAAGGAAAGACATTTATCATACACTCCAGTATTAAGAGTCATAAATGTGGTTAATCAGAATTACAAGGAATTGGACTTTTGGACACCAAAGTTGAAATTTTCTGGATCTCTTAAAATACTGAAAGACAGAGAGAAAATAGGTGATCATGCTACAAAAAACTTAACTGGAACAGTGGTCTGGCCAGGAGGCTTAAATTCTGTTGATCCTCCTAAGGGATGGGTATTACCTACCAATGTAAACCCTTTAAAAGTTGCACTACCTATGAACCCTGCTTTTGATAATTTTTTGAAGGAAGATTCCCCAAAGAAATATTCTGGTTTTTGTATTGATCTTTTCCACGCTGTCCGAGGAATTCTATATGACAAGTATTCAGGTCTTCCCTATGTATTTGATGCCTTCAATGAATCCTATGATATACTTCTGCAGAGAGTCATAAATGAGTCCCATGATGCTATTGTAGGAGATGTAACAATTCTCGCCAATCGATCAAAAGATGTGTGGTTCACTCAACCATACACTGAGTCAGGCTTATCGCTCATATTTCCTGCAGAGATTGATAGGTCAGCGTGGTTGTGTATGAAACCATTTAGCTGGGAAATGTGGGTTGCAACTATTGGCATCCTCCTATACACAATGTTTATCATTTGGTTCCTGGAGCATCACTTGAATCCAGAATTTGGTGATGGACCAGTGAAAAATCAGATCAGCACCACCCTGTGGTTTGCTTTTACTTCTCTATTTTTTGCTCATAAGGAGAAAATAAACAGCAACTCTGCAAGAGTAGTAGTTGGTGTATGGCTATTTCTTGTTTTTGTTCTGACATCAAGCTACACTGCCAACCTTTCTTCATTGCTCACTGTCAAAAGATTGAAGTCTGGAAGAGACGTTCAATGGCTTAAAAGAAACAACCTATCAGTTGGTTGTGATAACAGCAGTGGTTTTGTAAAGAGCTACTTGGTCAACGTGTATGGTTTCAATCCGCAGCAAGTGACAGAGGTTGATGGAGAACATGAAATTGTGGAAAAATTCAAGAGCAAAAGGATTTCTGCTCTCTTTCTTGAGAGCCCATATGAGAAAGTTTTCTTGAACAAGTATTGCAATGATTATACTGCAATTACAGCTGCATATAAATTTGGAGGACTGGGATTTGTATTCCAAAAAGGGTCTCCCATGGCAAAAGACTTTTCTGTAGCAATTTTAACACTAGCAGAAAATGGAACACTGAAAGCTTTGGAAGAGAAATGGTTGACCCCTTCCAAGGAATGCACAAACAGTTCAACCTCTCAAGAAACTGAGGCCCTGACTCTAGACAAATTCTGGGGCCTCTATGTCATAGGTGCTGCCACTTCCACCATCTGCTTAGTGCTGGCTTTACTGAGGAAGTACCTTCATAACCATAATCACTACCAGCATGAAGAGGAATCTCAACTTCAAGGAAATATTACAGCTGAGGACAATAGTGTTTGGAATAAGGCATTAAGAATCAGCACAGATTTTAACCATGGGAATCATAAAAGTATGGATAGAGCTGCAACTTTTGCTGGAAGTGGAACAAAGGGTGTACGTCGTAGGAACTCCTCCAGGTGGGAGCGTATAAGCATTTCCGAAGAACTGAGCAATCCACAGCGCTCCGAATCAGCTATCATAGAAATGCTGTAG 2781 0.4027 MKFYAQTSKAITNLLVWLPLITLILCQCLIGAKAANSSQTSSVGVVIDVNSEMGKQQKRAMQIAAQNFNNNSKTQNITLFFRDSAGNPLQAASAAEELITKKVKVIIGMETWQEAALVADLGAKAQVPIISFSSPPVVPPLMQLRWPFLIQMAKNEATHMNCIADIIHEFNWPKVIAIYEDNPYSSDSGMLSLFSEALQEVNSEIEYRLVLPPFTSLSDPKGVVLDELLKLLPLKSRIFVVLQASFPMVTHLFREAKKIGFLEKGTAWIINEGIASMLDSFNKSVLSSMEGTLGIQTYYSKSSSAYTQLQENFLAEHSETASSKPGSDALRAYDSITVVTKALEKISTNSSSSKVFLEEMLSSNFNGLSGNITFKERHLSYTPVLRVINVVNQNYKELDFWTPKLKFSGSLKILKDREKIGDHATKNLTGTVVWPGGLNSVDPPKGWVLPTNVNPLKVALPMNPAFDNFLKEDSPKKYSGFCIDLFHAVRGILYDKYSGLPYVFDAFNESYDILLQRVINESHDAIVGDVTILANRSKDVWFTQPYTESGLSLIFPAEIDRSAWLCMKPFSWEMWVATIGILLYTMFIIWFLEHHLNPEFGDGPVKNQISTTLWFAFTSLFFAHKEKINSNSARVVVGVWLFLVFVLTSSYTANLSSLLTVKRLKSGRDVQWLKRNNLSVGCDNSSGFVKSYLVNVYGFNPQQVTEVDGEHEIVEKFKSKRISALFLESPYEKVFLNKYCNDYTAITAAYKFGGLGFVFQKGSPMAKDFSVAILTLAENGTLKALEEKWLTPSKECTNSSTSQETEALTLDKFWGLYVIGAATSTICLVLALLRKYLHNHNHYQHEEESQLQGNITAEDNSVWNKALRISTDFNHGNHKSMDRAATFAGSGTKGVRRRNSSRWERISISEELSNPQRSESAIIEML* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2998 926 Gene3D - 734 797 - -
Lja6g2998 926 PIRSF IGluLR_plant 10 924 IPR017103 -
Lja6g2998 926 SUPERFAMILY Periplasmic binding protein-like I 39 403 IPR028082 -
Lja6g2998 926 Pfam Bacterial extracellular solute-binding proteins, family 3 472 791 IPR001638 -
Lja6g2998 926 Pfam Receptor family ligand binding region 57 390 IPR001828 -
Lja6g2998 926 SUPERFAMILY Periplasmic binding protein-like II 432 791 - -
Lja6g2998 926 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 922 - -
Lja6g2998 926 SMART GluR_14 455 792 IPR001320 GO:0015276|GO:0016020
Lja6g2998 926 Gene3D - 30 158 - -
Lja6g2998 926 Gene3D - 451 562 - -
Lja6g2998 926 Pfam Ligand-gated ion channel 792 821 IPR001320 GO:0015276|GO:0016020
Lja6g2998 926 Gene3D - 563 691 - -
Lja6g2998 926 Gene3D - 159 324 - -
Lja6g2998 926 PANTHER GLUTAMATE RECEPTOR 2 922 - -
Lja6g2998 926 CDD PBP1_GABAb_receptor_plant 42 408 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2998 Lja-Chr6 58769530 58774823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2998 23 855 Ion Channels AT2G29120 33.295 2.67e-135 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2998 - - lja:Lj6g3v2006120.2 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2998 6 58769530 58774823 Lja6g2998 6 58769530 58774823 ECH