Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2971 ATGTCAACTCATTCATCATCATCTTCTTCTTCTTCTATCTGGGCAGTGTCGAACATAAAGCTTCAGTTCTTTGCCCGCATCAGACGGTTTCTACAATCCAAAGCAACCCGAAAGCGCTGTGACGCCTCTGATCGATTCATCATAGCGAAAAGCAGGGCTGAACAGAACAACAACAAGGATGAAAATCTTGAAACAGTTCAAGTTATGGAGGCGAAGCATGAGGAGGAGGAGGAAGAATTTGAGGAGTCTGCGATCACCCTGTTGCAGAGGACTGTGAAGATGCTTCACTTTGGGAGCTGGGAAGAGAAGGAGGTGGCTGCAAAGGAGATTGGAAGGTTAGCTAAAGAGGATGTCAAGGTTAGAAAGTTGATAACGGAACTCGGGGTGGTGCCGGTGTTGGTATCGATGGTGGCGTCGCCGGTGGCTACCCGCCGCCAGGCAGGGTTGACGGCGTTGATCCAACTAGCTGATGGAACCTACACGAACAAGGCTTTGATAATGGAGGCAGGAATATTGTCCAAGCTGCCTAAGACAGTTGACCTTGTAGATGAATCAACAATGAGTGATTTTGCAGAGTTGCTTTTGTCATTGTCTTCTCTTGCAAACACTCAATTCCCTCATTCTTCATTAGATTTTATCCCATTTCTAAGAGAAATCCTTGAGACAAGCTCAAATTTTGATACCAAAGCATCATGTTTGGGAGCTTTATACAACCTATCAACTGTGTTGGACAATGTGGGGCCTTTGGTTTCTAATGAGATTGTCCCTATCCTCTTGGAACTGTCCTTAGTGAAAGAAATTTCAGAAAAGGCACTAGCCACTCTTGGGAACTTGGTGGTGACTTTGATGGGAAAGAAAGCAATCGAGAACAACTCAAGGGTGCCAATAAGCTTCATTGATATCTTGTCATGGGAAGATAAACCCAAATGCCAAGAGTTATCTGTTTATATTTTGATGATTCTTGCACATCAAAGCTCATCTCAGAGGGAGAAAATGGCACAGGCTGGGATTGTTCATGTGCTTCTTGAAGTGGTTTTGTTGGGGAGTGATTTGGCTCAGAAGAGAGCAATGAAACTGTTGCAATGGTTTAAGGATGAAAGGCAAACAAGGATGGGGCCACATTCAGGTCCACAAACACCAAGATTTGCAATGGGCTCACCTGTGAATCAAAGAGATGTGAAAGAAGGGAAGAAATTGATGAAGAGTTTGGTGAAACAGAGTTTGAATAGGAATTTGGAAATTATAACTCAGAGGGCAAATGCGTCTGGGGAGTGTTCTAATCAGAAGTCTTTGGTTATCAGCACTAGTTCTAAGAGTTTGCCTTACTAA 1329 0.4379 MSTHSSSSSSSSIWAVSNIKLQFFARIRRFLQSKATRKRCDASDRFIIAKSRAEQNNNKDENLETVQVMEAKHEEEEEEFEESAITLLQRTVKMLHFGSWEEKEVAAKEIGRLAKEDVKVRKLITELGVVPVLVSMVASPVATRRQAGLTALIQLADGTYTNKALIMEAGILSKLPKTVDLVDESTMSDFAELLLSLSSLANTQFPHSSLDFIPFLREILETSSNFDTKASCLGALYNLSTVLDNVGPLVSNEIVPILLELSLVKEISEKALATLGNLVVTLMGKKAIENNSRVPISFIDILSWEDKPKCQELSVYILMILAHQSSSQREKMAQAGIVHVLLEVVLLGSDLAQKRAMKLLQWFKDERQTRMGPHSGPQTPRFAMGSPVNQRDVKEGKKLMKSLVKQSLNRNLEIITQRANASGECSNQKSLVISTSSKSLPY* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2971 442 Coils Coil 59 79 - -
Lja6g2971 442 SUPERFAMILY ARM repeat 92 363 IPR016024 -
Lja6g2971 442 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 80 442 - -
Lja6g2971 442 MobiDBLite consensus disorder prediction 369 388 - -
Lja6g2971 442 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 80 442 - -
Lja6g2971 442 Gene3D - 55 428 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2971 Lja-Chr6 58605270 58608407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2971 72 410 U-box Gene Family AT1G27910 28.125 2.03e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2971 - - gmx:100813828 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2971 6 58605270 58608407 Lja6g2971 6 58605270 58608407 ECH