Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2956 ATGCCGGACTTCCACGATTCCCTCACGCCGCCGTCGCGTCCAACCCCCGTCCGCGAGGATTGCTGGTCTGAGGAAGCCTCCTCCACCCTCGTCGACGCCTGGGGGAGTCGCTACCTCGAACTCAACCGTGGAAACCTCCGTCAGAAGGATTGGCAGGATGTCGCCGACGCTGTCAACGCCCTCCATGGCCACACCAAGAAAACCTTCCGCACAGATGTTCAATGTAAGAATCGCATCGACACTATCAAGAAGAAGTATAAGATCGAGAAGGCTAGGGTTTCGTCTTCCAACGGTGTTGTTTCATCTTCCTGGCCGTTCTATGAACGGTTAGATGCTCTGATTGGTCCCAATTTTAATCCGAAGAAGTCTTCCTCCTCGCCTTCGCCATCGCCGCCGATTGCTCTCCCGTTGTTGCCGCATCGGAAGAATTCTTCTCCGTTTCCTGTGATCGCCACGCCGCCGACTGCCGTGGCGCTGCCGCAGAAGCGGCCTGCGGCTACCGCGATGGACGATGGTTACTTCAGGAGGAATTATTCCGCTGTGGCGGCCGCTGCGGCAGCGGCGGAGGCTGATGAGGATGACGACGAGGATGAGGATGATGAGGAGGATATGGAAGTGGAAGTGGAGGTGGAGGAGGAGGAAGAGGAGGATGAAGATGATGGGAGGGGGAGTGAAGTGGAGGAAGCGGAGGGGGAAGGGTTGAGTAGGTTGGCGAAGGCTATAGAGAGGTTTGGGGAAGTGTATGAGAGAATGGAGGAACAGAAAGTGAAACAGATGGTGGATTTGGAGAAACAGAGGATGCAGTTTACTAAAGATCTTGAGTTGCAGAGGATGCAGATGTTTATGGACACACAGGTTCAGCTTGAGAGAATTAAGCGCGGGAAACGATCTGGGTCAAACGATATGTATAGCTAG 915 0.5454 MPDFHDSLTPPSRPTPVREDCWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTFRTDVQCKNRIDTIKKKYKIEKARVSSSNGVVSSSWPFYERLDALIGPNFNPKKSSSSPSPSPPIALPLLPHRKNSSPFPVIATPPTAVALPQKRPAATAMDDGYFRRNYSAVAAAAAAAEADEDDDEDEDDEEDMEVEVEVEEEEEEDEDDGRGSEVEEAEGEGLSRLAKAIERFGEVYERMEEQKVKQMVDLEKQRMQFTKDLELQRMQMFMDTQVQLERIKRGKRSGSNDMYS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2956 304 MobiDBLite consensus disorder prediction 118 140 - -
Lja6g2956 304 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 9 300 IPR044823 -
Lja6g2956 304 Coils Coil 234 268 - -
Lja6g2956 304 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g2956 304 MobiDBLite consensus disorder prediction 184 236 - -
Lja6g2956 304 Pfam Myb/SANT-like DNA-binding domain 19 113 IPR044822 -
Lja6g2956 304 Gene3D - 22 88 - -
Lja6g2956 304 PANTHER OS05G0560600 PROTEIN 9 300 - -
Lja6g2956 304 MobiDBLite consensus disorder prediction 188 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2956 Lja-Chr6 58502813 58507395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2956 12 303 Trihelix Transcription Factor Family AT3G14180 32.692 4.97e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja6g2956 Myb_DNA-bind_4 2e-24 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2956 6 58502813 58507395 Lja6g2956 6 58502813 58507395 ECH