Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2946 ATGGAGAACAAACCAACAATCCTGATGAAAAAATACGAGCTTGGACGCATGCTTGGCCAAGGAAACTTCGCCAAGGTTTACTATGCAAGGAACATGAAGACGGGCCAGAGCGCGGCCATCAAAGTCCTCAACAAAGAGATGATTGTTAGGGTCGGTTTGAACGAGCAGATCAAGCGCGAAATCTCCGTGATGCGCCTCGTGAAACACCCTAACATTGTGCAGCTCTATGAGGTGATGGCGAGCAAAACAAAGATATATTTCGCAATGGAATACGTGAAAGGTGGTGAGCTTTTTGATAAAGTGTCCCGAGGGAAGCTGAGGGAAGATGTGGCCAGAAAATATTTCCAGCAGCTGATAAACGCTGTTGATCATTGCCACAACAGAGGGGTGTATCACCGTGACCTCAAACCGGAGAATCTTCTCCTAGATGAAAATGGGGACCTCAAAGTTACAGACTTTGGTTTGAGTGCATTGTTGGAATCAAAGAAAAGTGATGGTTTACTTCACACAACATGTGGAACTCCATCTTATGTAGCACCTGAGGTGATAAAAAAGAAAGGATATGATGGAGCCAGAGCAGATATTTGGTCATGTGGAGTGATTCTCTATGTTCTCTTAGCAGGTTTTCTTCCTTTCAATGATAAAAATCTAATGGAAATGTACAGAAAAATTACCACAGCAGATTTCAAGTTCCCTCCATGGTTCCGCTCAGACGCGAAAAGGCTTCTCTACAGAATCCTTGATCCCAATCCAAGGACTAGAATTAACATTGCCAAGATCATGCAGAGCACTTGGTTTACAAAAGGGTATAAGGAAATTGAAACACCACAATTGCCCCCTTTATCCCCTACAGGCCATGATGTACCTGATGTTCAGGCTATATTTGATTCATCAAGTTCAGATAGTGAAGATAGCCCAACTGCTGTGAAGCCTTATTGTTTCAATGCCTTTGATCTCATATCACTCTCTTCAGGATTTGACCTTTCTAGTCTGTTTGAGAAAGATAACAGTGAGAGACAACAGGCAATGTTCACTACTAGAAAACCACCTTCCACTGTAGTATCAAAACTTGAAGAGATAGCAATGATAGATGGTAGATTTGAGGTCATGAAGAAAAGTTGGGCTGTTAGATTGGAGAGGAGCAAGGCAGGGAACAGAGATCAACTCACAATAGATACAGAGATTTTTGAAGTTACTTCTTCATTTTATATTGTTGAGGTGAAGAAAATTGCTGGAGACACATTGGAGTATCGCAAGTTCTGGGACCAGTGCTTGAAGCCTTGTCTAAATGAAATAGCTTGGGTTTGGCAAGGATATGAGCAACAGCAATAG 1332 0.4219 MENKPTILMKKYELGRMLGQGNFAKVYYARNMKTGQSAAIKVLNKEMIVRVGLNEQIKREISVMRLVKHPNIVQLYEVMASKTKIYFAMEYVKGGELFDKVSRGKLREDVARKYFQQLINAVDHCHNRGVYHRDLKPENLLLDENGDLKVTDFGLSALLESKKSDGLLHTTCGTPSYVAPEVIKKKGYDGARADIWSCGVILYVLLAGFLPFNDKNLMEMYRKITTADFKFPPWFRSDAKRLLYRILDPNPRTRINIAKIMQSTWFTKGYKEIETPQLPPLSPTGHDVPDVQAIFDSSSSDSEDSPTAVKPYCFNAFDLISLSSGFDLSSLFEKDNSERQQAMFTTRKPPSTVVSKLEEIAMIDGRFEVMKKSWAVRLERSKAGNRDQLTIDTEIFEVTSSFYIVEVKKIAGDTLEYRKFWDQCLKPCLNEIAWVWQGYEQQQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2946 443 Pfam NAF domain 312 371 IPR004041 GO:0007165
Lja6g2946 443 CDD CIPK_C 315 430 - -
Lja6g2946 443 PANTHER - 2 443 - -
Lja6g2946 443 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Lja6g2946 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lja6g2946 443 Gene3D Kinase associated domain 1, KA1 311 435 - -
Lja6g2946 443 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2946 443 SUPERFAMILY Protein kinase-like (PK-like) 8 313 IPR011009 -
Lja6g2946 443 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2946 443 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lja6g2946 443 Gene3D Transferase(Phosphotransferase) domain 1 3 310 - -
Lja6g2946 443 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Lja6g2946 443 CDD STKc_SnRK3 11 265 - -
Lja6g2946 443 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2946 Lja-Chr6 58442861 58444192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2946 1 438 CBL-interacting serine-threonine protein kinases AT5G45820 64.009 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja6g2946 Pkinase 4.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2946 K07198 - gmx:100807927 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2946 6 58442861 58444192 Lja6g2946 6 58442861 58444192 ECH