Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2945 ATGGCGGACGTGCTTACCAGAAAAACCACCACCACCACCTCCGGCTCCGGCAAGAAGGAAACCTCAAACCTCCTCCTCGGCCGCTTCGAGATTGGCAAGCTTCTCGGCCATGGAACCTTCGCCAAAGTCTACTACGCCAGAAACATCAAAAACGGCGAAGGCGTCGCCATCAAAGTCATCGACAAGGAGAAGATTCTCAAAGGCGGTTTAGTCGCTCACATCAAACGCGAGATCTCAATCCTCCGCCGCGTCCGCCACCCTAACATCGTCCAGCTCTTCGAGGTCATGGCGACCAAAACCAAGATCTACTTCGTCATGGAGTACGTCCGCGGCGGGGAGCTTTTCAACAAGGTGGCGAAGGGGAGGTTGAAGGAGGAGGTTGCGAGGAAGTATTTCCAGCAATTGATCTCTGCTGTTGGATTCTGCCATGCTAGAGGCGTCTACCACCGCGATCTGAAGCCGGAGAATCTCTTGCTCGATGAGAACGGTAATCTCAAAGTCTCTGATTTCGGATTGAGTGCTGTTTCTGATCAGATTAGACAAGATGGGTTGTTTCACACGTTTTGTGGAACACCGGCTTATGTTGCTCCTGAGGTTCTTGCTAGGAAGGGTTACGATGGTGCTAAGGTTGATTTATGGTCTTGTGGGGTTGTCTTGTTTGTGTTGATGGCAGGGTATTTACCTTTCCATGACCAGAATGTTATGGCAATGTATAAGAAAATTTACAGGGGTGAGTTTAGGTGTCCTAGGTGGTTTTCGCCGGATTTGTCGAAGCTGTTGATTCGCCTTCTCGATACGAAACCTGAGACCAGGATTGCAATTCCTGATATTATGGAGAATAAGTGGTTCAAGAAAGGGTTCAAGCAGATTAAGTTTTATGTTGAGGATGATAGGCTTTGTAATGTTGATGATATTTTGGGTGAGAATGAGGATGATGCAGCTTCGATAACATCTGTGGCGTCGGTTGCATCGCTTTCGGATTACTCGGCTTGTGAGTCTGATTCTGAGGTAGAGATTAGGAGGAGGCAGCAGCATGGTCCGTTGCCGAGACCCGCGAGTTTGAATGCTTTTGATATTATATCAATGTCCCCCGGTTTCGACCTCTCTGGATTGTTTGAGGAGAAAGGGGACGAGGCGAGGTTTGTGACTGCTGCGCCGGTTTCGAAGATCATATCCAAATTGGAGGAGATTGCTCATCTGGTTAGGTTTTCTGTGAGGAAGAAGGATTGCAGGGTGAGCTTGGAGGGTACTAGAGAGGGTGTGAAGGGGCCATTGACTATTGCTGCTGAGATATTTGAATTGACACCTACTTTGGTTGTGGTGGAGGTGAAGAAGAAGGGAGGAGACAGAGCTGAGTATGAGAGGTTTTGCAACGATGAATTGAAACCTGGATTGGAGAATTTGATGGCTGAGGAAGCTGAAAGTGAAACTCCTAAAATCTTGTCTACACCTATTGAGCCTTCACTGCTGCGTGTGCTTTCTGAACCTGTGCACCATACTGATATTGAATCTCCGCGCTATCTACCTGAAGAAGAGTGA 1539 0.4815 MADVLTRKTTTTTSGSGKKETSNLLLGRFEIGKLLGHGTFAKVYYARNIKNGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSKLLIRLLDTKPETRIAIPDIMENKWFKKGFKQIKFYVEDDRLCNVDDILGENEDDAASITSVASVASLSDYSACESDSEVEIRRRQQHGPLPRPASLNAFDIISMSPGFDLSGLFEEKGDEARFVTAAPVSKIISKLEEIAHLVRFSVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPTLVVVEVKKKGGDRAEYERFCNDELKPGLENLMAEEAESETPKILSTPIEPSLLRVLSEPVHHTDIESPRYLPEEE* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2945 512 CDD STKc_SnRK3 28 282 - -
Lja6g2945 512 SMART serkin_6 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2945 512 ProSiteProfiles NAF domain profile. 349 373 IPR018451 GO:0007165
Lja6g2945 512 Gene3D Transferase(Phosphotransferase) domain 1 19 345 - -
Lja6g2945 512 MobiDBLite consensus disorder prediction 1 20 - -
Lja6g2945 512 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2945 512 SUPERFAMILY Protein kinase-like (PK-like) 25 284 IPR011009 -
Lja6g2945 512 Gene3D Kinase associated domain 1, KA1 349 470 - -
Lja6g2945 512 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Lja6g2945 512 Pfam NAF domain 351 407 IPR004041 GO:0007165
Lja6g2945 512 CDD CIPK_C 355 465 - -
Lja6g2945 512 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2945 512 PANTHER - 1 474 - -
Lja6g2945 512 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 19 1 474 - -
Lja6g2945 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2945 Lja-Chr6 58437007 58439129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2945 1 476 CBL-interacting serine-threonine protein kinases AT4G18700 76.730 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja6g2945 Pkinase 4.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2945 - - gmx:100790133 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2945 6 58437007 58439129 Lja6g2945 6 58437007 58439129 ECH