Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2944 ATGAAGCCCCTTTTCATATTGTTCATGTTTCTGTTCACCTTGGTTTCTCTCGTGGAATCTTCTTGTCAAGACCAGAAGCTGGTAATAAAGGCCTTCCAATCTGTCTCTGGATTCAACTCTTCCTGGTTCAACAAAACAGGTTCTTCTTCTTCTTCAAACTGTTCAAGTTCCCAGATTAGGTCCATAGAGCTTCCATCAAAAAACCTGAGAGGAAGCATCTCATGGAAGTACCTGAAGAACATGACCAAGCTGGAGATTCTCGATTTATCTGGGAACTATCTACAAGGCCAGATACCAAACTGGTTCTGGGAAAGCTCAAGCTTACTAGTAGTAAACCTCTCAAAAAACTGGTTAGGAGGAAGCATTGCTTTGAATTCAAAACCCACTTCCCAAAACGGTTCCATTCCAATTTCATCACTTCAATCACTCAATCTCTCACACAACAGGTTCACCAATCTGCTTCACCTCTCTGCTTTTTCCAACCTTAAAAGCCTCGACCTCTCACACAACAACCTAGGAACCTTACCTTCTGGGTTCCAAAATCTCACCAAACTACACCACCTTGATCTCTCAAGCTGCAACATTAGAGGAAGCATAAAACCCATTTCTTCTCTTCAATCACTCTCCTACCTGGACTTGTCAGACAACAGTTTCAACGGTAGCTTCCCCTCTGATTTCCCTCCTCTGAAACTCATCAAATTCTTCAACATCTCACATAACAACTTCAAATCCTTGGTTGATTTAGACAAGTTCAAGAAATTCGGGAAATCAGCATTTAATCACGCCGGCAACAACTTCAGCGTTTCCAAAACACCAACCCTTCATTCAATTCCAACCCCGCCGCACCACCTTCAACAAAAACCAAAACCCATTCACACCGAGAAGTCAAAACCCAAACCGCATGAACGTCGTCACAAGTCAAAGCACAAAAACAGAGCCATGATTGCTGCGGTGGTGTCCTCTGCTTCAGGGGTCGTGGTTGTTGTTTTCTGCGTGCTGGCATTCTGCGGTTACCGGAGGAAGAGGGAAAATGCGAAGAGGAGCAAGTGGGCAATCTCGACGCCCATGATGGCGGTGAGCGGCGTGAAGATGACGGAGAAGTCAGGGCCGTTCGCGTTTGAGACGGAGTCAGGGACGTCGTGGGTGGCGGACTTGAAGGAACCGTCGGCGGCGGCGGTGGTGGTGTTTGAGAAGCCGTTGATGAATCTGACATTCTCGGACCTCATGGCTGCCACGTCACACTTCGGGAAAGACTCGCTTCTAGCTGAGGGAAGGTGTGGGCCCGTGTATCGTGCTGTACTTCCAGGTGACATCCACGTGGCGATTAAGGTCCTTGAAAATGCTAGAGACGTTGATCATGATGACGCTGTCAACACCTTCGTTGACCTTTCGCAGCTTAAGCATCCTAATCTCTTGCCTCTCTCTGGTTACTGCATTGCAGGGAAGGAAAAGCTGGTGTTGTACGAGTTCATGTCAAACGGTGACTTAGGAAGGTGGCTGCACGAGCTACCCACGGGGGAGACTAACGTGGAAGATTGGAGCGGCGACACATGGGAGATTCAAAACGGCGTCGTTTCACGAGCCTCACCTCCAGAAAAAATGGGGTGGCCAACACGACACCGTATAGCCGTAGGGGTAGCGCGTGGCTTAGCATTCCTCCACCACGCCGGATCGAGGCCCGTCGTGCACGGCCACCTCGTGACCTCCAACGTCCTCCTCGCCGACGACTTCGAGCCACGAATCGCAGATTTCGGGTTCCGGAAGTTCGGGAACCGGCAATGCCCGCCGAATTGCAGCACGGAAACGGACGTGTACTGCTTCGGGGTTGTGCTGATGGAGCTTCTGACGGGGAAGTCCGGCACGGCGGAAACGGTGGTTTGGGTGAGGAAGCTGGTGAGGGAGGGCCACGGAGTGAGGTCATTGGACGAGAGGCTCCAACTTGGTGGCGGTGACTCGGAGAGTGAGATGCTGGAGAGCCTCCGAGTCGCGTACCTGTGCACCGCCGAGTCGCCGGGGAAGAGGCCCACCATGCAGCAGGTGTTGGGCCTACTCAAAGACATTCATCCTAGCCGGGGAATTGACTGA 2085 0.5113 MKPLFILFMFLFTLVSLVESSCQDQKLVIKAFQSVSGFNSSWFNKTGSSSSSNCSSSQIRSIELPSKNLRGSISWKYLKNMTKLEILDLSGNYLQGQIPNWFWESSSLLVVNLSKNWLGGSIALNSKPTSQNGSIPISSLQSLNLSHNRFTNLLHLSAFSNLKSLDLSHNNLGTLPSGFQNLTKLHHLDLSSCNIRGSIKPISSLQSLSYLDLSDNSFNGSFPSDFPPLKLIKFFNISHNNFKSLVDLDKFKKFGKSAFNHAGNNFSVSKTPTLHSIPTPPHHLQQKPKPIHTEKSKPKPHERRHKSKHKNRAMIAAVVSSASGVVVVVFCVLAFCGYRRKRENAKRSKWAISTPMMAVSGVKMTEKSGPFAFETESGTSWVADLKEPSAAAVVVFEKPLMNLTFSDLMAATSHFGKDSLLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDAVNTFVDLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGETNVEDWSGDTWEIQNGVVSRASPPEKMGWPTRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLLADDFEPRIADFGFRKFGNRQCPPNCSTETDVYCFGVVLMELLTGKSGTAETVVWVRKLVREGHGVRSLDERLQLGGGDSESEMLESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPSRGID* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2944 694 ProSiteProfiles Protein kinase domain profile. 415 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2944 694 SUPERFAMILY L domain-like 46 246 - -
Lja6g2944 694 Gene3D Ribonuclease Inhibitor 26 132 IPR032675 -
Lja6g2944 694 PANTHER KINASE, PUTATIVE-RELATED 4 694 - -
Lja6g2944 694 Pfam Protein tyrosine and serine/threonine kinase 419 588 IPR001245 GO:0004672|GO:0006468
Lja6g2944 694 ProSiteProfiles Leucine-rich repeat profile. 184 206 IPR001611 GO:0005515
Lja6g2944 694 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 694 - -
Lja6g2944 694 Gene3D Ribonuclease Inhibitor 133 321 IPR032675 -
Lja6g2944 694 Pfam Leucine Rich Repeat 83 102 IPR001611 GO:0005515
Lja6g2944 694 PRINTS Leucine-rich repeat signature 140 153 - -
Lja6g2944 694 PRINTS Leucine-rich repeat signature 159 172 - -
Lja6g2944 694 SUPERFAMILY Protein kinase-like (PK-like) 395 684 IPR011009 -
Lja6g2944 694 ProSiteProfiles Leucine-rich repeat profile. 161 183 IPR001611 GO:0005515
Lja6g2944 694 Pfam Leucine rich repeat 139 195 IPR001611 GO:0005515
Lja6g2944 694 Gene3D Transferase(Phosphotransferase) domain 1 491 692 - -
Lja6g2944 694 MobiDBLite consensus disorder prediction 270 310 - -
Lja6g2944 694 ProSiteProfiles Leucine-rich repeat profile. 139 160 IPR001611 GO:0005515
Lja6g2944 694 Gene3D Phosphorylase Kinase; domain 1 375 490 - -
Lja6g2944 694 SMART LRR_typ_2 159 181 IPR003591 -
Lja6g2944 694 SMART LRR_typ_2 205 228 IPR003591 -
Lja6g2944 694 SMART LRR_typ_2 81 105 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2944 Lja-Chr6 58424756 58428173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2944 57 687 Receptor kinase-like Gene Family AT5G07280 29.971 5.30e-69 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Lja6g2944 PK_Tyr_Ser-Thr 2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2944 - - gmx:100778920 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2944 6 58424756 58428173 Lja6g2944 6 58424756 58428173 ECH
Lja4g0920 4 7783393 7786849 Lja6g2944 6 58424756 58428173 PCT