Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2939 ATGGAGCATGTCAAAGTAGTTGCTTTGCTGGTTTCCTTCTTTCTGTGGAACTGGCTGCCAATGCTTGTTGTGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCATGAAGAGTAAGATGAATGATGGCTCGCATGTGATGAATGGTTGGGATATTAATTCAGTTGACCCTTGTACTTGGTACATGGTTGGTTGCTCTCCTGAGGGTTATGTGGTTTCCTTGGAAATGGCTAGTGTGGGTTTAACTGGAACCATTTCCTCAGGAATTGGAAATTTGAGCCACCTCCGAACATTGTTATTGCAGAACAATCAGTTATCTGGTCCTATCCCAGCTGAGATAGGAAAACTGCTAGAGCTTCAGACCCTTGACCTTTCTGGTAACCAGCTTGTTGGGGAAATTCCTACTTCTTTGGGGCTTTTGGCTCATCTTAGTTACTTGCGGCTCAACAAAAATAATCTATCTGGACAGATCCCTCAACTTGTTGCTAATCTCACAGGGCTTTCTTTCTTGGACTTGTCGTTTAATAATCTCAGTGGTCCTGCTCCAAAGATTTTAGCTATAGGTTATAGTCTTTCAGGAAACAACTTCCTCTGCACATCTTCATCCCACATTTGTAAAGGTGTTTCAAATCCAGTAAATGATGCAGGGTCATCTCAGACAGACAGCCATCATCACCATAGGAAGCTTTCTATTGTTATTGGTTTTAGTTGCACATTCATAATTTCAGTGATGCTGCTTCTCTATTGGTTGCATTGGTACAGATCACGCTTGCTCTATTCATCTTATGTGGAACAAGATTGTGAATTCGATATTGGTCATTTGAAGAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGGAAATTTCAATCCAAAAAACATTCTAGGACAAGGTGGTTTTGGTGTTGTTTTCAAAGGATGCCTTGCAAATAAAATGTTGGTGGCAGTAAAGAGGCTGAAAGATCCCAATTACACTGGAGAGGTGCAGTTTCAAACAGAGGTTGAGATGATTGGCTTGGCTGTGCATCGGAATCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTTGTTTATCCATACATGCCCAATGGCAGTGTGGCTGATCGCTTGAGAGAGCCTTGTCGTGAAAAGCCAGCTTTGGACTGGAACAGGCGAATGCGTGTTGCTCTCGGGGCTGCCCGTGGACTTCTGTATTTGCATGAACAGTGCAATCCGAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTGGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTCGCTAAGCTCTTGGATCAAAGGGATTCACATGTAACTACTGCAGTACGGGGTACTGTAGGGCACATTGCCCCTGAGTATCTCTCTACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTCATAACTGGACAAAAGGCACTGGATGCGGGCAATGGTCAGGTCCAAAAGGGAATGCTCCTTGATTGGGTTAGAACCCTATTTGAGGAGAAGCGACTAGAAGTGTTTGTTGATAGGGATCTGAAGGGATGTTTTGATCCAGAAGAGCTAGAAAAAGCAGTGGAGCTGTCTTTACAATGTACTCAGTCACTTCCTAGTTTGAGACCTAAGATGTCAGACGTTTTGAAGATTTTAGAAGGCCTGGTTGGGCTGTCAGCGCGGCCGGAGGAGTCACAAGGGGGAGCAAACCTATATGATGAAAGGACTCGCAGTTTCTCGCAGAATAGCGATGTTCATGAAGAACCTTCCTTCATCATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA 1863 0.438 MEHVKVVALLVSFFLWNWLPMLVVGTDSLLSPKGVNYEVAALMSMKSKMNDGSHVMNGWDINSVDPCTWYMVGCSPEGYVVSLEMASVGLTGTISSGIGNLSHLRTLLLQNNQLSGPIPAEIGKLLELQTLDLSGNQLVGEIPTSLGLLAHLSYLRLNKNNLSGQIPQLVANLTGLSFLDLSFNNLSGPAPKILAIGYSLSGNNFLCTSSSHICKGVSNPVNDAGSSQTDSHHHHRKLSIVIGFSCTFIISVMLLLYWLHWYRSRLLYSSYVEQDCEFDIGHLKRFSFRELQIATGNFNPKNILGQGGFGVVFKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLREPCREKPALDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMLLDWVRTLFEEKRLEVFVDRDLKGCFDPEELEKAVELSLQCTQSLPSLRPKMSDVLKILEGLVGLSARPEESQGGANLYDERTRSFSQNSDVHEEPSFIIEAIELSGPR* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2939 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 620 - -
Lja6g2939 620 Gene3D Phosphorylase Kinase; domain 1 268 373 - -
Lja6g2939 620 SUPERFAMILY Protein kinase-like (PK-like) 281 571 IPR011009 -
Lja6g2939 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Lja6g2939 620 Gene3D Transferase(Phosphotransferase) domain 1 374 575 - -
Lja6g2939 620 Gene3D Ribonuclease Inhibitor 35 215 IPR032675 -
Lja6g2939 620 ProSiteProfiles Leucine-rich repeat profile. 127 149 IPR001611 GO:0005515
Lja6g2939 620 SMART serkin_6 298 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2939 620 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Lja6g2939 620 Pfam Protein kinase domain 300 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2939 620 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Lja6g2939 620 SUPERFAMILY L domain-like 37 209 - -
Lja6g2939 620 ProSiteProfiles Protein kinase domain profile. 298 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2939 620 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2939 Lja-Chr6 58393660 58398139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2939 43 620 Receptor kinase-like Gene Family AT5G45780 70.740 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lja6g2939 Pkinase 4.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2939 - - gmx:100810610 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2939 6 58393660 58398139 Lja6g2939 6 58393660 58398139 ECH