Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2938 ATGGCTAAACTATGCTCTCATCTTCTCTTTATTTTTGTGCTCTCACTAAATTACTTCTGGCCTTGCTTAGCTATGATGAGTAGAAAAAACACCACCACCGATAAACTTACACTCCTTGCATTCAAATCCTTCATTACTTTAGACCCCAATCATGTAACTAAAAATTGGTCAACCTCTTCTTCTTCTTCATTATGCAATTGGGCTGGTGTGATTTGTGATGAAAGCCATGGAAGAGTGAAAGCTTTGAATCTGAGTAACATGGGCCTTGAAGGCCCTATTTCACCACAACTGGGTAATCTCTCTTTCCTTGTTGAGCTTGACCTCCATGGCAACAAATTCTATGGTAAGTTACCACAAGAGCTATTTCAGTTGCACCAACTGAAATTGCTTGACTTGAGCAACAACAACTTAGAAGGAGAATTAACAACAGCAATAGGGGAATCATCAAATCTTCAACACTTGAATCTTGGCAGCAACAATTTTATTGGTTTGATCCCTCAATCTATGTTGTACAACTTGTCAAAGCTAGTGCACTTAAACTGTTCATTCAATTTCTTCAAAGGAACCATTCCATCTGAGATTGATCAACTTGACCGGTTGAAGATTTTGGATTTGAGAAATAACACGCTCTCAGGAACCATACCACCAACCATTACAAACGTGTCTTCACTTGAAGAACTCCATCTATCTTACAACTCCTTATCAGGAGAAATTCCAAAAGGAATTGGTGATCTTGGACAGCTAAGAAGAATGCACGTTCAATATAATGAACTTTCTGGCAGCATATCATCAATATTCAACAACTCAGCGTTGCAATACTTAGATCTGGGTCATAATAGTCTGTCTGGTAATCTCCCATCAAATATTTGCCAAGGCCTTCCAAAGCTTAAATCGCTGTATCTTTTCGAAAATGATCTTTCTGGTAAGATGCCAACTGTTTGGTATCAATGCAAAGATTTGGAAGATTTGGAATTATCATTCAATAGTTTCGACAAAGGACATATCCCACATGATATGGGAAACTTGACCAAGCTTCAATATTTATATCTTTTTGACAACAACTTGGAAGGTGAAATCCCTATCTCCCTTTTAAACATATCTTCTCTGAGAGAGGTGGTCCTTCAACAAAACAATTTAAATGGAAGTCTCCCACAGGATATGTGTAATCACCTTCCTCAGCTTCAATTACTTAATTTACGCAGGAATCAATTAGTAGGAAGCATTCCAAAATCCATTGGAAACTGCACATCCCTTGAAATGTTAAGTTTAGGGGACAACACTTTCACAGGATCTATACCCATGGAGATTGGTGATCTTAATCAAATTAATACAATACTAATGGGAAATAACAGCTTGAGTGGATCCATTCCTTCAAAACTCTTCAACATTTCAACACTCTCATCCTTGTATCTTGCAAGAAATTCACTCTCAGGAACTCTTCCATCAGATATGGGACATGGTCTTCCTAACCTGAAAGAACTCTACCTTTTTAAAAACAAACTTGTTGGGAACATTCCACATGGTATATCCAATGCTTCTAAGCTCACTGCAATTGATTTCAGCGACAATCATTTCAGTGGTATCATACCAAATGTGTTTGGAGATTTGACAGGCCTCGAATGGTTCGGTTTAGCTGTGAATAATTTGACCACAGATGACCCTACTGAGCTCAAGCTCCTTACTTCCTTGACAAATTGCATAAACTTGGTATATCTAGCTATATCATCGAATAGTTTACAGTCAAAACTTCCCAAATCAATTGGAAACTTTTCCAACTCGCTGGAGAACTTTTTGGCAGATTCTTCTGGAATTAATGGCAACATTCCACTTGAAATTGGAAACATGAGCAACTTGGTCTATTTATCTTTAGGAGGGAATGATTTCGGTGGAACAGTGCCTGGAACGATCAAAAGGTTACGGAAACTTCAGTATTTGGACCTTGGCTACTGTGGACTGCACGGAACCATCATTGATGAGCTTTGTGAAATCAGGAGTCTGGGTGAGTTAAATCTAACAAACAATAAGTTTTCTGGAGAGTTGCCAACATGCTTGGGAAACATGACTTCTCTTAGAAAGGTTTACTTGGGATCTAACAGATTAACTTCTAGGATACCTACTTCTTTTTGGAATCTCAGAGATATCATAGAGGCTAACTTATCTTCCAATGCTTTAACTGGAAATCTTCCACCTAATATAGGGCAGTTGAGAGCTGTTGTGCTGCTTGATCTGTCAAGAAATGAGATTTCAGGCAACATACCTTCAACCATTAGTTTCTTGAAAACTTTGCAAACTCTCTCCTTAGCTCATAACAAATTGCAAGGTTCTATTCCTGTATCACTTGGTGAAATGGTGAGCTTGAGTTTCTTGGACTTGTCCCAGAATCTTTTAACTGGTGTGATCCCAAAATCCTTAGAGTCACTTGCCTATCTTCAATACATTAACTTTTCATACAATAGGTTACAAGGAGAAATTCCCAATGGTGGACCTTTCATAAATTCCACAGCTCAATCTTTCCTGCATAATGAAGCACTTTGTGGCAGACCTCACCTGCAGGTACCTCCATGTGGTAAACAAGGCAGGCGAAGATCAACGACAAAGCTGCTATTAATCAAAATTATGCTGCCAATAGTTGTGTCAATCATTTTGGTTGTTGCTATATGCATAATCCTTAAACAACATAAGAAGAAAAAGGTTGAAAATCCACCAGAAGAGGATTTATCAACTTTAGGAGTTCCAAGAAGGATTTCCTATTATGAACTTGTGCAAGCAACTAATGGCTTCAACGAGAGTAACTTACTTGGAAAGGGGAGCTTTGGTTCGGTATATAAAGGGGTTCTCTTTAGTGGGATGGTTGTTGCAATTAAAGTAATTGATTTAAATTTGGAAGTAGCATCAAGGAGCTTTGAAGCAGAATGCAATGCAATGCGCAATCTACGACATCGAAATCTTGTTAGTATTATCAGCAGCTGTTCAAATGTTGATTTCAAATCTTTGGTAATGGATTTGATGCCAAATGGGAGTTTGGACAACTGGTTATACTCACATAACTATTGTCTAGATTTCTTGCAAAGATTGAATATAATGATAGATGTGGCATCTGCATTGGAATATCTCCACCATGGTTCTTCAATACCAGTTGTTCATTGTGATCTGAAGCCTAGCAATGTTTTATTGGATGAAAACATGGTTGCACATGTTAGCGATTTCGGCATTGCCAAGCTCTTGGATGAAGGACACTCTAAAACACATACTGAGACCTTGGCGACTCTTGGCTATGTTGCACCAGAGTATGGATCTAAGGGAATTGTTTCTGTCAAAGGAGATGTATACAGCTATGGGATTGTGCTAATGGAAATCTTCACAAGAAAGAAGCCAACAGATGATATGTTTTCAGCAGAATTAAGCTTGAAAAATTGGATCAATGAATCAATGCCCAATTCAATGATGGATGTTGTGGATTCTAATTTAGTCCAACAACATGAGGAACAAATAGATGACATGTTGCCTCATATATCATCTATTTTGGGATTAGCCTTGAGTTGTTGTGCAGAGTCACCCGAAGCACGAATTAATATGATAGAGGTTACTGCATCATTAACCAAAATCAAAGCTTTGTTCACTCATTGA 3627 0.3813 MAKLCSHLLFIFVLSLNYFWPCLAMMSRKNTTTDKLTLLAFKSFITLDPNHVTKNWSTSSSSSLCNWAGVICDESHGRVKALNLSNMGLEGPISPQLGNLSFLVELDLHGNKFYGKLPQELFQLHQLKLLDLSNNNLEGELTTAIGESSNLQHLNLGSNNFIGLIPQSMLYNLSKLVHLNCSFNFFKGTIPSEIDQLDRLKILDLRNNTLSGTIPPTITNVSSLEELHLSYNSLSGEIPKGIGDLGQLRRMHVQYNELSGSISSIFNNSALQYLDLGHNSLSGNLPSNICQGLPKLKSLYLFENDLSGKMPTVWYQCKDLEDLELSFNSFDKGHIPHDMGNLTKLQYLYLFDNNLEGEIPISLLNISSLREVVLQQNNLNGSLPQDMCNHLPQLQLLNLRRNQLVGSIPKSIGNCTSLEMLSLGDNTFTGSIPMEIGDLNQINTILMGNNSLSGSIPSKLFNISTLSSLYLARNSLSGTLPSDMGHGLPNLKELYLFKNKLVGNIPHGISNASKLTAIDFSDNHFSGIIPNVFGDLTGLEWFGLAVNNLTTDDPTELKLLTSLTNCINLVYLAISSNSLQSKLPKSIGNFSNSLENFLADSSGINGNIPLEIGNMSNLVYLSLGGNDFGGTVPGTIKRLRKLQYLDLGYCGLHGTIIDELCEIRSLGELNLTNNKFSGELPTCLGNMTSLRKVYLGSNRLTSRIPTSFWNLRDIIEANLSSNALTGNLPPNIGQLRAVVLLDLSRNEISGNIPSTISFLKTLQTLSLAHNKLQGSIPVSLGEMVSLSFLDLSQNLLTGVIPKSLESLAYLQYINFSYNRLQGEIPNGGPFINSTAQSFLHNEALCGRPHLQVPPCGKQGRRRSTTKLLLIKIMLPIVVSIILVVAICIILKQHKKKKVENPPEEDLSTLGVPRRISYYELVQATNGFNESNLLGKGSFGSVYKGVLFSGMVVAIKVIDLNLEVASRSFEAECNAMRNLRHRNLVSIISSCSNVDFKSLVMDLMPNGSLDNWLYSHNYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLLDEGHSKTHTETLATLGYVAPEYGSKGIVSVKGDVYSYGIVLMEIFTRKKPTDDMFSAELSLKNWINESMPNSMMDVVDSNLVQQHEEQIDDMLPHISSILGLALSCCAESPEARINMIEVTASLTKIKALFTH* 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2938 1208 Gene3D Ribonuclease Inhibitor 93 263 IPR032675 -
Lja6g2938 1208 Gene3D Ribonuclease Inhibitor 264 388 IPR032675 -
Lja6g2938 1208 Gene3D Ribonuclease Inhibitor 26 92 IPR032675 -
Lja6g2938 1208 SUPERFAMILY Protein kinase-like (PK-like) 906 1199 IPR011009 -
Lja6g2938 1208 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Lja6g2938 1208 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 198 331 - -
Lja6g2938 1208 SUPERFAMILY L domain-like 59 384 - -
Lja6g2938 1208 SUPERFAMILY RNI-like 487 826 - -
Lja6g2938 1208 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 14 145 - -
Lja6g2938 1208 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 404 1206 - -
Lja6g2938 1208 Gene3D Transferase(Phosphotransferase) domain 1 1003 1206 - -
Lja6g2938 1208 Pfam Protein kinase domain 928 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2938 1208 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 14 145 - -
Lja6g2938 1208 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 198 331 - -
Lja6g2938 1208 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 404 1206 - -
Lja6g2938 1208 SMART serkin_6 927 1206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2938 1208 SMART LRR_typ_2 488 512 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 783 806 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 463 487 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 269 292 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 391 415 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 100 124 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 197 220 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 735 759 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 293 316 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 366 390 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 221 245 IPR003591 -
Lja6g2938 1208 SMART LRR_typ_2 687 710 IPR003591 -
Lja6g2938 1208 Pfam Leucine Rich Repeat 271 293 IPR001611 GO:0005515
Lja6g2938 1208 Pfam Leucine Rich Repeat 150 168 IPR001611 GO:0005515
Lja6g2938 1208 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1046 1058 IPR008271 GO:0004672|GO:0006468
Lja6g2938 1208 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 295 434 - -
Lja6g2938 1208 ProSitePatterns Protein kinases ATP-binding region signature. 933 955 IPR017441 GO:0005524
Lja6g2938 1208 ProSiteProfiles Protein kinase domain profile. 927 1208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2938 1208 Pfam Leucine rich repeat 740 796 IPR001611 GO:0005515
Lja6g2938 1208 Pfam Leucine rich repeat 199 258 IPR001611 GO:0005515
Lja6g2938 1208 Pfam Leucine rich repeat 368 426 IPR001611 GO:0005515
Lja6g2938 1208 SUPERFAMILY L domain-like 333 481 - -
Lja6g2938 1208 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 146 239 - -
Lja6g2938 1208 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 295 434 - -
Lja6g2938 1208 Gene3D Ribonuclease Inhibitor 389 482 IPR032675 -
Lja6g2938 1208 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 146 239 - -
Lja6g2938 1208 SMART LRR_sd22_2 759 780 - -
Lja6g2938 1208 SMART LRR_sd22_2 197 226 - -
Lja6g2938 1208 SMART LRR_sd22_2 124 153 - -
Lja6g2938 1208 SMART LRR_sd22_2 342 368 - -
Lja6g2938 1208 SMART LRR_sd22_2 615 647 - -
Lja6g2938 1208 SMART LRR_sd22_2 783 809 - -
Lja6g2938 1208 SMART LRR_sd22_2 268 287 - -
Lja6g2938 1208 SMART LRR_sd22_2 488 507 - -
Lja6g2938 1208 SMART LRR_sd22_2 687 713 - -
Lja6g2938 1208 Gene3D Phosphorylase Kinase; domain 1 888 1001 - -
Lja6g2938 1208 Gene3D Ribonuclease Inhibitor 563 856 IPR032675 -
Lja6g2938 1208 Gene3D Ribonuclease Inhibitor 483 562 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2938 Lja-Chr6 58380321 58388252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2938 604 844 Receptor kinase-like Gene Family AT3G47570 34.979 3.52e-27 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja6g2938 Pkinase 4.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2938 - K13420 gmx:100784397 1296.18