Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2928 ATGGGAGCACCAACATGTGGAATCCGTAGCCGAAAGAAGTCATCAAGAGGCCACCACAGGTTTGTAGGCGTTCGTCAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGATTCTCTCCAGAAAGTTAGGCTCTGGCTCGGAACATTTGACACCGCGGAGGATGCAGCTCGCGCATATGACAATGCTGCTAGAGCTCTGAGAGGTGCTAATGCTAGAACTAACTTTGAATTGCCTGAGTCTGAAACCACTGGTGGTGCTGCTAAGCGTGGTTCTGGTTCCAATTTCATGCCTACTGAGCCTTTTTCCTTTGAGGATGCAAATGAGTCAAGTGCAGATGCTGATGGTCTTCTTGGTGCACTCAAGGCTAAACTGTTGGATGGAACAAAGGAAGGGAAGTTTCAATTTCCATTTCCTGCTACTAATTGTGCAGGACACGCTGTTCAACCTGGCATGGTTAATCCAATATCAACTCAGAAATGTTATGGGAAGAAGGAGAAAGAGAAAGAGAAAGAGAAAGAGTTGTCATCAACAACTTCACTCTATCATATGAATGGAACTTCCAACACTTTGCCTTCTTTGTTGAGTCCTTCATCAAACACTTCTACTAAGAGTGTGGTTCTCCCAAATCATGATCATATGGAAGGTGTTGTAGCTAGCAGTTCTGGAATCAACTATCAACAACTTTGTCAAACTCCACCTTTAACAAGCATGACATGGTCCAATGACATGGCATATGAATTGCCTTGGCCTATGCAGATGAACCAAGTTACTACTGACACTGCAGCAAACTTTCCATGGCCACTTTATGGGGTGATGGAGCCTAGTGTTGATATGACATGTACAGATCAGGGACCATCACATAGCAATAAGAGTGGCCAAACAAATATGATGAGCATGCAATTGCCTCAAGTTGGGGGAGGGAGTGAAGGCTTCTGGTCAATGGAGCAGCAACAATTTGTGCAGAGTGAGAACAACAAGTGGTTTGGTTCTAGTGGCTCTTGGGATCCACTTTTCTATAATTGCATTGCTGAAATGATGAAGATTTGTGATGAATGGAAACCTTTTATAGTAATGATAGCAATTGATTTTTCTTTTGCCGCTGTGAATGTTCTTCTCAAGAAAGTCCTTGAAGAAGGAATGAACCATTTGGTTTTCATCACATACCGTCTCTCAATTGCTACCATTTTCATAGCCCCTATTGGCTACTTTAGGGAAAGAAATGGCAGACCAAGGCTCACATTTCGAATTCTATGTTACCTCTTCTTCAGTGCCATTGTTGGGGCATCAGTGACTCAGTACTTTTTTCTTCTGGGGATCCAATACACTTCTGCTACATTTTCTTGTGCTTTCATAAACATAGTGCCTGCGGTCACGTTCATCATGGCTTTGCCATTTGGGTTAGAGACAGTGAACATCAAATGCAACAGTGGAAGAGCTAAGATTGTTGGCACATTGGTGTGCATAGGAGGCACTTTGTTGTTGACACTTTACAGAGGAAAGGCCTTGTTTAATTTTTCTCATTATCAGTCTGCAGTGAAGCTTGCTCCTACAAGGACAGCAAGAGGATGGACTATTGGTGTAATAGCTTTGATCTTGGGAACCCTCTTCTGGTCTTCCTGGTTCATTTTACAATCAAATATAAGCAAGAGATATCCATGCCAGTATTCTAGCACAGCCATCATGAGCTTCTTTGGAGCAATTCAATCAGCTGCCATTTGCTTCTTCACTGACCAAAACTTGTCCATTTGGGTTCTCAAAGGAAAGATACAACTAATTTCTATTCTGTATGCTGGAATGATTGGATCAGGTTTGTGTTTTGTGGGCATGTCATGGTGTGTGAAGAAGAGGGGTCCTGTTTTTACTGCAGCATTCAGTCCTCTTGTTCAGATAATGGCAGCCATGATTGATATCCCTTTCTTGCATGAACAGCTCCATCTTGGAAGTGTGATTGGGTCCATCCTGGTGATGATTGGATTATACATTCTTCTGTGGGGTAAGAGCAAGGAGATGCAGAATCGTTTGGTTAACCTAGATCAGGAAGCTGAAGAAACCAAGGAACAAGAGCCACAACTGCAAATACAACACTTAACAGTGACTTGTGATTCGCGGTGTCAATGA 2121 0.43 MGAPTCGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPESETTGGAAKRGSGSNFMPTEPFSFEDANESSADADGLLGALKAKLLDGTKEGKFQFPFPATNCAGHAVQPGMVNPISTQKCYGKKEKEKEKEKELSSTTSLYHMNGTSNTLPSLLSPSSNTSTKSVVLPNHDHMEGVVASSSGINYQQLCQTPPLTSMTWSNDMAYELPWPMQMNQVTTDTAANFPWPLYGVMEPSVDMTCTDQGPSHSNKSGQTNMMSMQLPQVGGGSEGFWSMEQQQFVQSENNKWFGSSGSWDPLFYNCIAEMMKICDEWKPFIVMIAIDFSFAAVNVLLKKVLEEGMNHLVFITYRLSIATIFIAPIGYFRERNGRPRLTFRILCYLFFSAIVGASVTQYFFLLGIQYTSATFSCAFINIVPAVTFIMALPFGLETVNIKCNSGRAKIVGTLVCIGGTLLLTLYRGKALFNFSHYQSAVKLAPTRTARGWTIGVIALILGTLFWSSWFILQSNISKRYPCQYSSTAIMSFFGAIQSAAICFFTDQNLSIWVLKGKIQLISILYAGMIGSGLCFVGMSWCVKKRGPVFTAAFSPLVQIMAAMIDIPFLHEQLHLGSVIGSILVMIGLYILLWGKSKEMQNRLVNLDQEAEETKEQEPQLQIQHLTVTCDSRCQ* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2928 706 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lja6g2928 706 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Lja6g2928 706 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Lja6g2928 706 Coils Coil 668 695 - -
Lja6g2928 706 Pfam EamA-like transporter family 526 664 IPR000620 GO:0016020|GO:0016021
Lja6g2928 706 Pfam EamA-like transporter family 356 496 IPR000620 GO:0016020|GO:0016021
Lja6g2928 706 PANTHER WAT1-RELATED PROTEIN 355 688 - -
Lja6g2928 706 SUPERFAMILY DNA-binding domain 21 77 IPR016177 GO:0003677
Lja6g2928 706 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lja6g2928 706 MobiDBLite consensus disorder prediction 74 109 - -
Lja6g2928 706 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lja6g2928 706 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lja6g2928 706 SUPERFAMILY Multidrug resistance efflux transporter EmrE 589 669 - -
Lja6g2928 706 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Lja6g2928 706 PANTHER WAT1-RELATED PROTEIN 355 688 IPR030184 GO:0016021|GO:0022857
Lja6g2928 706 SUPERFAMILY Multidrug resistance efflux transporter EmrE 389 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2928 Lja-Chr6 58328173 58334824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2928 353 598 Nodulin-like Gene Family AT3G30340 50.000 8.43e-83 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja6g2928 EamA 6e-13 CL0184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2928 - - gmx:100803670 627.476