Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2925 ATGGATGCCAACATACCCGTTGGATTCATATTCCATCCAACAGAGGAAGAGCTCGTTGGTCACTACCTCAAGCGCATGTTGGAGGGTGATAATGCCTCTGTGATCAACATCATCCCTGAGATTGGACTTTGCAGTGTTGAGCCTGAAGAGATTCCAGCCCGTACGTTGATAAAGACCCTTAAACCAGAATGGTATTTCTTCAGTCCTATTGAGTACAAGAATGCTGGTACAAGTGGAAAGATGAACAGGGTAACCCCGAGAGGGTTCTGGAAAATCTGTGGAAATACTGACATAATCATGGAAACGGACACCAACAAAGTCATTGGGACAAGGAAGTATCTTCGTTTTTATGAAGGCCGCTCCGGCAAGAATCAATCCAGAACCAACTGGGCTATGTATGAGTATCATGCTGTTGCTACCTCAGATGATGCCCATCAGAAGAAGTTTGTTTTATGTCGCTTGATGAACACAGAGAAGGAAACCACAGCTGAGAAGGAAACCACAGCTGAGAAGAAAACTCCATGGGGAACCGGTGCATTGACATTTGATAAAGGGGACCCTAGTAGACACATGGCTTCTGACTGTAAAAACAAAGCTGCAGAAGAAGGGATTACAGATATATTTGATAGTATTCCAGAAATGAATGTGGATTCCACCCTTCAGACAATGGATCCGATATTTGGTAGTTTTCCAGAAAGGAATGTGGATCCAAACTTTGATGAGGAACTGTCTCTCCCAGAGCTTCCATCTCACAATGCCAATTTTAGAAATGAAAATAGCAGTACGCAGGTTTCAGTGGAACTTACTGAAGAGGAATATGTGTATTTGAAATCAATTTTTCCAGATAGGAATTTTGTTTCCACTAAAAAAAGAAGAAACGCTTTTGTGAAGGGTTCCACACAGCCAGAGTCATTGAGAATATACTATGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTGCACTGTGTTTCAATATTGTGGATACTTCAACAGTGCGTGATGAACATCCTAGTTCAGGTGAATATCATGCATCAAAAATGTATAAATCATCCTGTGACTCAACTGCAGATAAAGCTTTGGGCAATTGTATTGGAAATTCTGGTTCTCTTTCTCCAAGGAGATGGAAATATCAGTATCATACCAAACCATTCATATCACAAAGAGCTGCTGCCAGGTTTCAATATCAACCACCGAGGAAGCTTTCAGGCAATGCAGTATCCAATCTTGAGGCGAGAAAACCCAGCAGCTGTACAAGAAAAATGAAGAAGCCAGAAAAGGATCACGTGATAGCTCGAAATAGTAGTTCAAAAAAGAATTCAGAAACCAGAAACCAGCAATCCTCTAATGTCAACAGAGAAGGTTCTTTCATCTGCCAGGAGACAGCTTCATCAAGCCAAAGCCTATTTCTTCTTCTTGCTAACATAGTTTTGGGGATTTTGTTGTTCACAGTTATTAGTTTGGAACTGTTATCATATTAG 1479 0.4118 MDANIPVGFIFHPTEEELVGHYLKRMLEGDNASVINIIPEIGLCSVEPEEIPARTLIKTLKPEWYFFSPIEYKNAGTSGKMNRVTPRGFWKICGNTDIIMETDTNKVIGTRKYLRFYEGRSGKNQSRTNWAMYEYHAVATSDDAHQKKFVLCRLMNTEKETTAEKETTAEKKTPWGTGALTFDKGDPSRHMASDCKNKAAEEGITDIFDSIPEMNVDSTLQTMDPIFGSFPERNVDPNFDEELSLPELPSHNANFRNENSSTQVSVELTEEEYVYLKSIFPDRNFVSTKKRRNAFVKGSTQPESLRIYYESSDTDAEVVSALCFNIVDTSTVRDEHPSSGEYHASKMYKSSCDSTADKALGNCIGNSGSLSPRRWKYQYHTKPFISQRAAARFQYQPPRKLSGNAVSNLEARKPSSCTRKMKKPEKDHVIARNSSSKKNSETRNQQSSNVNREGSFICQETASSSQSLFLLLANIVLGILLFTVISLELLSY* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2925 492 Pfam No apical meristem (NAM) protein 6 136 IPR003441 GO:0003677|GO:0006355
Lja6g2925 492 MobiDBLite consensus disorder prediction 404 451 - -
Lja6g2925 492 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 446 - -
Lja6g2925 492 MobiDBLite consensus disorder prediction 415 434 - -
Lja6g2925 492 Gene3D NAC domain 14 163 IPR036093 GO:0003677|GO:0006355
Lja6g2925 492 MobiDBLite consensus disorder prediction 435 451 - -
Lja6g2925 492 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 7 446 - -
Lja6g2925 492 ProSiteProfiles NAC domain profile. 5 157 IPR003441 GO:0003677|GO:0006355
Lja6g2925 492 MobiDBLite consensus disorder prediction 162 192 - -
Lja6g2925 492 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2925 Lja-Chr6 58316363 58319408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2925 4 156 NAC Transcription Factor Family AT4G35580 41.667 2.38e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja6g2925 NAM 3.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2925 - - gsj:114390609 312.768