Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2924 ATGGGTGGAGGCACTTTTCAAATGCTGGATTTGTTGCCTGTGGGATTCAGGTTCAAACCAACAGATCAAGAGCTGGTGGATCACTACCTCAAACACAAGTTGCAGGGTGATGATTCGGATTCCCTTGTTGCCAAGATTCCTGTGCTTAATCTTTGTAAGGTTGAACCTTGGGATATTCCAGCCTTTTCGGTGATAAAGTCAAATGAACCAGAATGGTATTTCTTCAGTCCTCTTCAGTCCAACAGGGCAAACAGACATGGGTTCTGGAAATACGTGGGAAGTGACCGTAACATCAAGACAACTCGCACCAACATTGTCATTGGGACCAGGAAGACTCTTGTTTTCTGTCGAGGAGGTGGGGAGACCGACTGGGTTATTCATGAGTATCATGCTGCTGCTACCTTTGATCAGGCCCAGGTATGTGATGTTTTGCCAGAAGAGAATATGGATTCAATCTTTCAGACACCACAACAGGCACTATCTCACAATGCCAATTTTAGAAATGAAAACAGTAGCAGACAGACTCTGGAAGATAAGTTTTTGAATTCAATTTCTTCTAAGGATTTTGTTAGAAGTGAAGAAATAAGACACGCTTTTGTGAAGGATTTCACCCAACCAGAGTCATTGAGATGGCCCTTCAGAACCATGCACACCCCTACCCTTCTCAGAAGGGTAAACTCTGAAAGCAGTCAGGCATATGCTGAAGTAGTCTCTGCACTGATTAAGAAGGAATTTCCCATTGAAGAATCAGAAATAGAATCATCAGGCGATAGCTCGAAATAA 783 0.4317 MGGGTFQMLDLLPVGFRFKPTDQELVDHYLKHKLQGDDSDSLVAKIPVLNLCKVEPWDIPAFSVIKSNEPEWYFFSPLQSNRANRHGFWKYVGSDRNIKTTRTNIVIGTRKTLVFCRGGGETDWVIHEYHAAATFDQAQVCDVLPEENMDSIFQTPQQALSHNANFRNENSSRQTLEDKFLNSISSKDFVRSEEIRHAFVKDFTQPESLRWPFRTMHTPTLLRRVNSESSQAYAEVVSALIKKEFPIEESEIESSGDSSK* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2924 260 Pfam No apical meristem (NAM) protein 13 130 IPR003441 GO:0003677|GO:0006355
Lja6g2924 260 Gene3D NAC domain 21 188 IPR036093 GO:0003677|GO:0006355
Lja6g2924 260 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 179 - -
Lja6g2924 260 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 14 179 - -
Lja6g2924 260 ProSiteProfiles NAC domain profile. 12 146 IPR003441 GO:0003677|GO:0006355
Lja6g2924 260 SUPERFAMILY NAC domain 8 137 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2924 Lja-Chr6 58296955 58305528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2924 9 130 NAC Transcription Factor Family AT4G35580 50.746 1.58e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja6g2924 NAM 3.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2924 - - lja:Lj6g3v1983320.1 296.975