Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2921 ATGACTAGGGCAATCCGGAATAGGGTACTTAAGGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATTCATTTGACAAATTGTATTCACTTGAAGAACCATATGCATAAGACTAGTCCCATACTGGCTGATAGGTCAATCATGAGGGACCTTGTTGTGCTGCAGAGATCGCGATCTCTCAGGGACCCTTCTGCAAGTCCTCCATCATGGCACTCACCTTCTGTGGTTGAGCTGCTCTCCAAAAGAGCCGAAAATGATGCCGCGGCTCAGGGGGGAAGAAGGTCTGTAGGTGGTGTTGAGCGCGGAAAGGAAGGGAGGAGGAGATTGTCCGGAACGTCGCCGCCCTTGGCGAGTATAGGCACAACAAGAGTTGCTCCTGGTGAGGTTAGCCATAGTCGGGGTAATGATGGGGTGCCGGCAAATAGTGAACGTAGTAGCAGGAGTGGAGTGGGGGATGGGAGGAGAGTTGGGAGACAAGAATCTGGTAGGAAGAGTGATAGGCCTAATTATTTGGATCTTAGCCAAGACCAATCTCTCAATCAAGCAGGCAAAAGTTTGGCTGAAGATGTTATTTCAAGGCACTCTGAGCCTAAAGAGAGAAAGAGCAAACAAAGGGTAAAGAATGTTCGGGATGTTCAAGTTAAGACCCTCTCTGAGCAGTTGAATGATGTTCCTCTGGATAGTGATGATTTAGCATCATCAAACATTCATTTTCATGGAAGGTTTCCCAGACAGGAGAAAATTATTGCGGAGGCGGAAGCCAGCATGCGCGGTCATGGAATGAATAGGGGAAAAAGACGTAAATTTCGAAGTGCAAGGAGAGCTCGGGTTGGTACAGCATCTAGAGATATTGGAGCTGAGAATGAAATGTCTGTGGCTTCCAACTCATTGGCTCAGGGTTCAGCCCACCAGAAATATCACTCGGAGGAGGTTGATGAGTACCCTGATGGAAATGTTACTAGGGCTCCAAATAATGGGTGTGGTATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCTTTGATATGGCTGGAAGAAGTTTGTCTTGTGGTTTATCTGAATCAAGGTTGAAGAAAGGAGCATTATCTGCCAATGGAAGAAATATTTCTGAGATGCCAGGTGGATCTGAATACTCAAGCTCATATACTAAATCCGATGCAGAGGCACTGCCTTTACTAGTTGATGCATCTGGATCTCATGGAAGCACTGAAAATGCTTGTTGGGACCATCACTATTCTGGGGAACTAGGTATTTATGGTGATCATTTATTCAAGCACGATATGGATTCTGACCTTGCTTCTGAAGCTAGATCTGGTGATCAACATAAGTTGAGAGGGAATAGTCATAGTAGGCATCAAAGCTTAACACAAAAATATATGCCACGAACTTTCAGTAAAATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTAATTAGAAGGAAAGTTGGATTGTTATATGTGTTTTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCGTATTTGCCAGAGCTTTGAATTGTAATTCTTCAGAGCATTCAAAACCTTGTGGCTTTTGCAATTACTGCATAGCGCATGATATGGGAAAGAGTAGAAATATAAGGGAAGTTGGTCCAGTTAGTAATTTTGACTTTGAGAGCATTATGGATCTACTTGACAATATGACTGTTCCCCAGCTTCCATCACAATACAGAGTGTTTATTTTTGATGAATGTGATACTCTGTCAGCAGATTGTTGGAATGCTATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTCGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAGTTCTTTTTCCCAAAGCTGAAGGATTCAGATATTATATATACACTTCAGTTGATCGCAACCGAAGAAGGTCTAGAAATTGATCAGGATGCCCTGAAACTCATTGCATCAAGATCAGATGGATCATTGAGAGATGCTGAGATGACCCTAGAACAACTCAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTGGTTCAGGAGCTGGTAGGGCTTATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACTGTGAAGAATTTGCGAGCGATCATGGAAACTGGTGTTGAGCCATTAGCTTTAATGTCGCAACTGGCCACAGTAATTACTGATATACTTGCTGGGAGCTATGATTTCACAAAAGAAAGGCAAAGAAGGAGGTTTTTCCGGAGACAACCATTGTCCAAAGAAGACATGGAAAAGCTTCGCCAAGCTTTGAAAACATTATCGGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACGGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATGTGTTGCCTACGTCATCTGATCATAGTTTCAACCATAGTCCCTTGGATGTGAAAAATGGAGATGTGAGAGACGCAGCTAGAATCACTGGTAATCCTGTTGAAATTAATAACAAAGGGAGACGATTGTCAGTGGATGGTAGAATAGAAAATTTCCATGCTGGAAGCTCAGCAGATGGTGTGACAAAGGGTCCTGGTTCAGAGAAAAGAAGACTTAGTGTGTCTGGTTGTACTCCTCAACATACTTATCCGCATGCCACCAATAATATCAGGGTAAATGAGAGGCTGATTGCGGGTAAAAACCGCAAAGAAATTGAAGAGATATGGTTTGAGGTGCTTGAGAGGGTTCAAGTGACTGGGCTGAAAGAGTTTTTGTATAAAGAAGGCAAGCTGATCTCTGTTAATTTTGGACCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAACTGACCAAAACTACTGCTGAGAAATATACTGGTCATATCTTGCAAGCATTTGAATCTGTCCTTGGATCTTCTATAATAATGGAAATTAGATGTGAGTCAAATAAAGATGCAGGCTCAGCTATTCAACTGCCTCTTATATTGCCTTCCATCAACAATGGACCATCTCAGATAAGAAACTTAAATGGTGTTGGCACGGAAACTCATCCTTCACTAACTGATTCTGTTGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGCAGCTTCTGTTAAAAGTCTACAATGTACAAGTACAAGGCAAGCATCAGCTTCGCGAAAAAATCCAAATGTTAAATCCCATTTAGACCAAAGAAAGCTTAGGGAGGAAAGTCAATGTCGAAGTCTTGTAAAAAGTAAGGTGTCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCAGCGGAGTGGGTGGTCAAAACGCAAGGCAGTTTCCATTGCTGAAAAGCTCGAACAAGAGAACTTGAGACTGGAGCCAAGATCAAGGAGCTTACTATGCTGGAAAGCATCAAGAGCAACCCGTCGGAAGCTGTCACGCTTGAAAATCCGAACCCGAAAACCACGTGCGTTGCTGAACCTTGTGCCCTGTGGGAGATGTCTCTCTACGAAATCTCCAAGGTAG 3531 0.431 MTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKTSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVELLSKRAENDAAAQGGRRSVGGVERGKEGRRRLSGTSPPLASIGTTRVAPGEVSHSRGNDGVPANSERSSRSGVGDGRRVGRQESGRKSDRPNYLDLSQDQSLNQAGKSLAEDVISRHSEPKERKSKQRVKNVRDVQVKTLSEQLNDVPLDSDDLASSNIHFHGRFPRQEKIIAEAEASMRGHGMNRGKRRKFRSARRARVGTASRDIGAENEMSVASNSLAQGSAHQKYHSEEVDEYPDGNVTRAPNNGCGIPWNWSRIHHRGKTFFDMAGRSLSCGLSESRLKKGALSANGRNISEMPGGSEYSSSYTKSDAEALPLLVDASGSHGSTENACWDHHYSGELGIYGDHLFKHDMDSDLASEARSGDQHKLRGNSHSRHQSLTQKYMPRTFSKMVGQNLVAQALSNAVIRRKVGLLYVFYGPHGTGKTSCARVFARALNCNSSEHSKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFESIMDLLDNMTVPQLPSQYRVFIFDECDTLSADCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDSDIIYTLQLIATEEGLEIDQDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRAIMETGVEPLALMSQLATVITDILAGSYDFTKERQRRRFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDHSFNHSPLDVKNGDVRDAARITGNPVEINNKGRRLSVDGRIENFHAGSSADGVTKGPGSEKRRLSVSGCTPQHTYPHATNNIRVNERLIAGKNRKEIEEIWFEVLERVQVTGLKEFLYKEGKLISVNFGPAPTVQLMFSSQLTKTTAEKYTGHILQAFESVLGSSIIMEIRCESNKDAGSAIQLPLILPSINNGPSQIRNLNGVGTETHPSLTDSVEKRRGEIVEEAASVKSLQCTSTRQASASRKNPNVKSHLDQRKLREESQCRSLVKSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRRKLSRLKIRTRKPRALLNLVPCGRCLSTKSPR* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2921 1176 CDD AAA 473 632 - -
Lja6g2921 1176 MobiDBLite consensus disorder prediction 173 187 - -
Lja6g2921 1176 MobiDBLite consensus disorder prediction 150 172 - -
Lja6g2921 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 679 IPR027417 -
Lja6g2921 1176 Pfam DNA polymerase III, delta subunit 475 632 - -
Lja6g2921 1176 Coils Coil 768 795 - -
Lja6g2921 1176 MobiDBLite consensus disorder prediction 86 209 - -
Lja6g2921 1176 MobiDBLite consensus disorder prediction 263 277 - -
Lja6g2921 1176 MobiDBLite consensus disorder prediction 1053 1076 - -
Lja6g2921 1176 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 194 1143 - -
Lja6g2921 1176 Pfam DNA polymerase III subunits gamma and tau domain III 688 807 IPR022754 GO:0003887
Lja6g2921 1176 CDD HLD_clamp_pol_III_gamma_tau 632 695 IPR045085 -
Lja6g2921 1176 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 458 806 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lja6g2921 1176 MobiDBLite consensus disorder prediction 1053 1068 - -
Lja6g2921 1176 MobiDBLite consensus disorder prediction 439 460 - -
Lja6g2921 1176 MobiDBLite consensus disorder prediction 191 209 - -
Lja6g2921 1176 MobiDBLite consensus disorder prediction 259 282 - -
Lja6g2921 1176 Gene3D - 633 695 - -
Lja6g2921 1176 SUPERFAMILY post-AAA+ oligomerization domain-like 703 806 IPR008921 GO:0003677|GO:0006260
Lja6g2921 1176 Gene3D - 450 629 IPR027417 -
Lja6g2921 1176 PANTHER PROTEIN STICHEL-LIKE 3 194 1143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2921 Lja-Chr6 58260796 58267906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2921 458 744 Core DNA Replication Machinery Family AT1G21690 24.490 2.14e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2921 - - gmx:100809005 1877.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2921 6 58260796 58267906 Lja6g2921 6 58260796 58267906 ECH