Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2918 ATGGCTTCAGGCGCAATTTTCGCGTCTCTGCGGCGGAGGAGGTCGCCGACGTTGGACGCGTTTCTCGCCCCCGTTGACTTGAGCGACGTCGCTTTGGTGCAGACGCTTGTAGCGGTGGCTGGTGAGCTTGTGTCTTGCTTTTCCAAGCGTCCGTTCTTCTTCCAGAGCAAGAATTCCCGGTCTCTGATCCGGAAGGTGGAGGTTTTTCAGCTGCTGTTGGAGTATCTGAGCGATTCTGGTTCTGGGGCGTGTCTTCCACCTACTGCGTTACTTTGTCTCAAGGAGCTTTACCTGCTGCTGTACCGGACCAAGATTCTGCTTGATTATTGCGCACAGTCGAGTAAGTTGTGGCTTTTGCTTCAGAACCATTCGATTTCTGGTCATTTCCATGATTTGAACCAAGAGATTTCGACCCTTTTGGATGTTTTTCCGATTAAGGATGTTAGGTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTGTTGCAGAAGCAGTCTAGAAGGGCTAAGCTGTTTATAGACAAGAAAGATGATGCTCTTAGGATCCGGTTTTTTTCTTTTCTTGATGAGTTTGAGAAAGGGCAGATTCCTGGTTCAGCTGAATTGCAATCTTTCTATGTTGATAAGTTGCAGATTCTTGATGCTTCTGGTTGTAGAAATGAAATTGATGCTTTGGAGGAGCAGATTGTTAACCATGAGGGTGACATTGAGCCTACGATTTCGGTGCTAAAAGGGTTGGTGGCCATGACTCGGTATTGCAGGTTTTTGCTCTTTGGGTTTGAGGAAGATGAGCTGGATTTGGAAGGTGGAAGTATGAAGAAGTCAAAGAGGAGATTGATTACTCAGGAAATTGCGGAAACGTTTTTAACTGTTCCGAAGGACTTTTGCTGCCCAATATCATTGGATTTGATGAGAGACCCGGTGATAATTTCCACTGGTCAAACTTATGAGAGGAGTTCCATTTCAAGGTGGATGGAAGAAGGGCACACAACTTGCCCAAAAACAGGACAAATGCTTGGCCACAATCGCCTAGTTCCTAATCGTGCTCTGAGGAACTTGATTGTGCAGTGGTGCTCCGCTCATGGAGTTCCCCTTGACCCACCGGAGGTGTTGGAGGCAGAAGCTTTTGCATCAGCTTGTCCCACCAAGGCTGCCCTTGAAGCCAACAAAGCCACAGCAGCACTTCTCATTCAACAGCTAGCTAACGGGTCACAATTTGGAAAGACTATAGCTGCTCGGGAGATACGGTTTCTAGCGAAAACTGGCAGAGAAAATCGTGCCTTCATTGCAGAAGCAGGGGCGATTCCTTATCTTCGGAACCTACTTTCATCACATAATGCCGTAGCTCAGGAGAATTCTGTGACTGCATTGCTCAACCTATCCATTTTCGACAAGAACAAAAGTCGGATCATGGATGAAGAAGGGTGTCTAGGATCAATTGTTGATGTGTTGAGATTTGGGCACACAACAGAAGCAAGGGAAAATGCGGCTGCAACATTGTTCAGCCTATCAGCCGTCCATGACTACAAGAAAGTAATTGCAGATAGAACAGGAGCTGTTGAAGCCCTGGCAGGTCTATTGCAAGATGGAACTCCTAGAGGAAAGAAGGATGCTGTAACAGCTTTGTTCAATCTTTCGACACACACTGAGAATTGTGTTAGAATGATTGAGGCAGGGGCAGTGACGGCTCTAGTTGGAGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCCCTCGCGTTGATTGTCCGGCAGCCTATTGGAGCCAAGGCAGTAGTGACTGAGGACGAAGCAGTTGTTGGATTGATAGGAATGATGCGTTGTGGAACACCGAGAGGTAAAGAGAATGCAGTTGCAGCTTTACTCGAGTTGTGCAGGGGTGGAGGTGCGGCTGCAACTGAAAGGGTGGTTAAGGCGCCAGCTTTGGCTGGATTACTTCAAACCTTGCTTTTCACCGGGACAAAGCGGGCGAGACGGAAAGCTGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTTTGCATTATGGTGGATTAGGTGTAGGGTATGCATTAGCTAGCAATTCAGCTCCTACTAGAGATACAAGCTATGCGGGTGATGTTTCAGTACCAATGTCCATTTCTGTCCCTGTTCTATAG 2148 0.4739 MASGAIFASLRRRRSPTLDAFLAPVDLSDVALVQTLVAVAGELVSCFSKRPFFFQSKNSRSLIRKVEVFQLLLEYLSDSGSGACLPPTALLCLKELYLLLYRTKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPIKDVRLSKDVREQVELLQKQSRRAKLFIDKKDDALRIRFFSFLDEFEKGQIPGSAELQSFYVDKLQILDASGCRNEIDALEEQIVNHEGDIEPTISVLKGLVAMTRYCRFLLFGFEEDELDLEGGSMKKSKRRLITQEIAETFLTVPKDFCCPISLDLMRDPVIISTGQTYERSSISRWMEEGHTTCPKTGQMLGHNRLVPNRALRNLIVQWCSAHGVPLDPPEVLEAEAFASACPTKAALEANKATAALLIQQLANGSQFGKTIAAREIRFLAKTGRENRAFIAEAGAIPYLRNLLSSHNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKVIADRTGAVEALAGLLQDGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPIGAKAVVTEDEAVVGLIGMMRCGTPRGKENAVAALLELCRGGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYALASNSAPTRDTSYAGDVSVPMSISVPVL* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2918 715 Coils Coil 214 234 - -
Lja6g2918 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 696 - -
Lja6g2918 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 363 IPR013083 -
Lja6g2918 715 CDD RING-Ubox_PUB 294 336 IPR045210 -
Lja6g2918 715 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
Lja6g2918 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Lja6g2918 715 Gene3D - 391 667 IPR011989 -
Lja6g2918 715 SMART arm_5 547 585 IPR000225 GO:0005515
Lja6g2918 715 SMART arm_5 421 461 IPR000225 GO:0005515
Lja6g2918 715 SMART arm_5 506 546 IPR000225 GO:0005515
Lja6g2918 715 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Lja6g2918 715 SUPERFAMILY RING/U-box 278 363 - -
Lja6g2918 715 PANTHER U BOX DOMAIN-CONTAINING 12 696 - -
Lja6g2918 715 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Lja6g2918 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Lja6g2918 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Lja6g2918 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2918 Lja-Chr6 58238253 58241154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2918 1 715 U-box Gene Family AT1G29340 67.843 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2918 - - gmx:100811153 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2918 6 58238253 58241154 Lja6g2918 6 58238253 58241154 ECH