Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2917 ATGAAGTGGGGTGGAAGAAAAAATTCTTCATCTTCTTCTTCTGAGCCTTCTTTCATCTCTAAAACTCAAAAGGCATCTCATTTTTCTTGGCTGTCAAAGTTCATGCAGATGAGAATCAATTCAGAACCAAGTCCTGCAAAAATCAAGCACAAGGAAAATCGGAATTCTACATCTTCTGCTGGTAGTTCATCTTCATCACATTATTCTTGTAGGAATGGAGATAGATTTTATGCTGGATATGATGGTGTTTTCAGGAAACAATCATGTGAAGAAGATAGTACAGATAAGAGAAGTAAAGATTTTGATGACAATGTCATTGCATCCTCAAGTTTCCACAGTGGTAGAAGCAATGCTATGAGAAATGGAAGAAGAGAAGGTGCCCCCCAGTTAAAGGAGAAGAGAGAAGAACAGAGAAAGTTGCTGAATGATCAAAAGGTTTCAAATGAGATGATGGATGAGTACAATCGAGAATTGGAATATGAGTACTTAAGGAGGAGATTCGAGAGGAAAGCACAACAAGTTTTGCAAGCGCAGCTCTTGAAACTTGAAAGAGAAATCAAGGAAGTTGAATTTGCTTCAGGTAAAGATGTGGAAAAAGATGTGTTGCAATTTGAATCACCTAGAACAATTTGCACACCACGAACACATTCTTTTGCCTCTTCTGATTCCAAGAATTTTAGAAATATCGTAGAAGATCGCGTGTTTAGTACACAGAATTTCGAGAAAAATGACAGCACAACTCGGAAGAGACTGAGTTCTGAGAAGCAGAATTTGAAGGTAAAGATTGAGAAACAGACGCAACCACTTCATGTAAGCAGAGAAGTTCAGAGGAGGAAACCAAAGCACAGCTCCAAAGTCAGAATTAACTCTCCAAGGATGGCTTCCATTTCCAAGGTTGAAAGTTGCAAAATAAAGGCTATAGAAGACATGAGGAAAGCAAAACTGAAGGTGAAGAAAGAAAGAAAAGAAATTGTGGAGGAAACACCAGAGTTAGATAGCTTTGCAGTGATTAAAAGTTCATTGGATCCAAAGCAGGATTTCAGAGATTCAATGATTGAGATGATCATGGAGAAGCAGATTAGTCAGCCACAAGAAATGGAAGAGCTTTTGGCATGTTATCTGACTTTGAATGCTGATGAGTATCATGATCTCATCATCAAAGTGTTCAGGCAAGTATGGTTTGATATGAGCCAATATGGTTTGGGAATTAAATCAGAAATGCAATGGTGTTGCTATGAATAA 1242 0.38 MKWGGRKNSSSSSSEPSFISKTQKASHFSWLSKFMQMRINSEPSPAKIKHKENRNSTSSAGSSSSSHYSCRNGDRFYAGYDGVFRKQSCEEDSTDKRSKDFDDNVIASSSFHSGRSNAMRNGRREGAPQLKEKREEQRKLLNDQKVSNEMMDEYNRELEYEYLRRRFERKAQQVLQAQLLKLEREIKEVEFASGKDVEKDVLQFESPRTICTPRTHSFASSDSKNFRNIVEDRVFSTQNFEKNDSTTRKRLSSEKQNLKVKIEKQTQPLHVSREVQRRKPKHSSKVRINSPRMASISKVESCKIKAIEDMRKAKLKVKKERKEIVEETPELDSFAVIKSSLDPKQDFRDSMIEMIMEKQISQPQEMEELLACYLTLNADEYHDLIIKVFRQVWFDMSQYGLGIKSEMQWCCYE* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2917 413 MobiDBLite consensus disorder prediction 125 139 - -
Lja6g2917 413 MobiDBLite consensus disorder prediction 89 103 - -
Lja6g2917 413 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 335 396 IPR006458 -
Lja6g2917 413 MobiDBLite consensus disorder prediction 1 23 - -
Lja6g2917 413 Coils Coil 303 327 - -
Lja6g2917 413 MobiDBLite consensus disorder prediction 241 288 - -
Lja6g2917 413 MobiDBLite consensus disorder prediction 243 274 - -
Lja6g2917 413 Coils Coil 172 192 - -
Lja6g2917 413 MobiDBLite consensus disorder prediction 89 139 - -
Lja6g2917 413 Pfam Transcriptional repressor, ovate 340 396 IPR006458 -
Lja6g2917 413 MobiDBLite consensus disorder prediction 55 69 - -
Lja6g2917 413 ProSiteProfiles OVATE domain profile. 336 395 IPR006458 -
Lja6g2917 413 PANTHER TRANSCRIPTION REPRESSOR OFP4 8 406 - -
Lja6g2917 413 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 8 406 IPR038933 GO:0045892
Lja6g2917 413 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2917 Lja-Chr6 58233727 58234968 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja6g2917 Ovate 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2917 - - gmx:102666239 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2917 6 58233727 58234968 Lja6g2917 6 58233727 58234968 ECH
Lja4g0900 4 7534668 7535834 Lja6g2917 6 58233727 58234968 PCT