Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2916 ATGGAGGAAGCTCATGGAAGTTCCAATTCCCTGCCTCCTTTCCTGACCAAGATTTATGAGATGGTAGATGATCCTTCATCTAATACTGTTGTTTCATGGAGTTCCACCAATAAGAGTTTCATTGTTTGGAATCCACCAGAATTTGCAAGGGATTTGTTGCCAAAATTCTTCAAGCACAACAACTTCTCAAGTTTTATTAGGCAGCTCAACACTTATGGCTTTAGAAAGGTTGATCCAGAACAATGGGAATTTGCAAATGAGGATTTTGTGAGAGGTCAACCTCATCTTTTGAAGAATATCCATAGGCGTAAACCAGTTCATAGCCATTCTTTGCAGAATGTCCAAGGGGCTGTTTCCCCACTAACGGAATCAGAACGACAGAGCTTGAAAGATCAGATAGAGAAGCTTAAACATGATAAAGAGCAACTTCTTCTGGAGTTACAGCGACACGAACAGGAGTGGAAAATGTACGAGATACAACTACATTGCTCAAAGGATCGTTTGGAGACGTTGGAAAAGAAGCATCAAACTATGCTCTCTTCTGTTTCTCAAGTGCTGCAGAAGCCTGGAATTGCCTTAAACCATTGGCAGCTGACAGAAAACATGGAGAGGAAAAGAAGGTTGCCGAGAAGTGGTCAGATTAGTGATGAAGCTAGCATTGAAGATCCCATGGAAGCTTCCCAAGTGTTATCTAAAGAAAATGCTGAGAGTACTTCTGCTTTCACATTAAGCACGGAGCGATTGGATTCGCTTGAGTCATCCATGACTTTTTGGGAGAATATTGTTCATGATGTTGGTGGCGTCTCCTCTTTTCATAGTCATTCCAATTTGGATTTTGATGCATCTATAAGCTGTGCCAATAGTCCAGCTATCTCTTGTATGCAACTAGATGTGGAAGTTCAACCCAAGTCACCCAGCATCGACATGAACTCTGAGCCAGCTGTAGCTGCTGTTCATGATCTCGTTGCATCAGAAGAACAACCTGCAGTAGCAGCCCCTGTGGCTACCGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAAAATCCTGGTGCCCAGGAAGCACAATCAGAAAGAAAGGAGTCTAATGGCAGAAACAATGAGGGAAAACCAGGTGACTTTGGTAGATTTTGGTGGAACATTAGGAATGTAAATAACCTTCCAGAACAGATGGGGCAGTCTTAG 1188 0.4251 MEEAHGSSNSLPPFLTKIYEMVDDPSSNTVVSWSSTNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPHLLKNIHRRKPVHSHSLQNVQGAVSPLTESERQSLKDQIEKLKHDKEQLLLELQRHEQEWKMYEIQLHCSKDRLETLEKKHQTMLSSVSQVLQKPGIALNHWQLTENMERKRRLPRSGQISDEASIEDPMEASQVLSKENAESTSAFTLSTERLDSLESSMTFWENIVHDVGGVSSFHSHSNLDFDASISCANSPAISCMQLDVEVQPKSPSIDMNSEPAVAAVHDLVASEEQPAVAAPVATGVNDVFWEQFLTENPGAQEAQSERKESNGRNNEGKPGDFGRFWWNIRNVNNLPEQMGQS* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2916 395 Coils Coil 126 160 - -
Lja6g2916 395 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Lja6g2916 395 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g2916 395 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g2916 395 Gene3D - 6 104 IPR036388 -
Lja6g2916 395 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 382 IPR027725 -
Lja6g2916 395 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g2916 395 MobiDBLite consensus disorder prediction 350 376 - -
Lja6g2916 395 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g2916 395 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g2916 395 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g2916 395 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2916 Lja-Chr6 58229330 58231488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2916 2 393 HSF AT4G18880 52.854 8.16e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja6g2916 HSF_DNA-bind 4.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2916 K09419 - gmx:100820566 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2916 6 58229330 58231488 Lja6g2916 6 58229330 58231488 ECH
Lja6g2916 6 58229330 58231488 Lja4g0899 4 7523190 7525634 ECH
Lja4g0899 4 7523190 7525634 Lja6g2916 6 58229330 58231488 PCT