Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2902 ATGGCTCAGAACACAGCAAGCAATGGAAACCATGATGTGGTTTTAAATGTTAAAGCTGATACTGATGCCTCCAAAAAGTGTGATGGCATCAAAGAAGACTGTGTCCCACTGTTTCAGAAGTTGGTAGCAGAGGTGGTGGGGACATACTTCTTGATATTTGCAGGGTGTGCTGCTATTGTAGTGAACCTTGGCCATGATAAGGTGGTAACACTTCCTGGAATTGCAATTGTTTGGGGACTCGTGGTTATGGTGTTGGTTTACACCCTTGGTCACATCTCCGGTTGTCATCTGAACCCAGCTGTTACCATTGCTCATGCTACCACCAAAAGATTTCCCCTCAAGCAGGTACCAACTTATATACTAGCTCAGTTAGTTGGAGCCACACTTGCAAGTGGAACTCTTAGGCTCATATTCAATGGCAAGGAAAACCATTTTCCTGGAACACTAGCTTCTGGTTCTGACCTTCAAGCTTTTGTGGTTGAATTCATAACCACTTTCTATCTCATGTTTGTAATTTCTGGAGTTGCCACGGACAACAGAGCTATTGGTGAATTGGCAGGGCTTGCAATTGGGTCTACCATCCTGCTAAATGTCATGATTGCCGGGCCAATCACTGGAGCATCAATGAATCCTGCAAGAAGTTTAGGACCTGCTATCGTACACAACGAATACAAAGGAATATGGGTATTTATGGTGGCACCAGTTCTAGGTGCAGTGACGGGTACATGGGTGTATAACTGCATCAGGTACACCAACAAGTCTGTGCGTGAGATCACTCAGAGTGCCTCTTTCCTACGGGGAGGAGCAAAGTAG 813 0.4526 MAQNTASNGNHDVVLNVKADTDASKKCDGIKEDCVPLFQKLVAEVVGTYFLIFAGCAAIVVNLGHDKVVTLPGIAIVWGLVVMVLVYTLGHISGCHLNPAVTIAHATTKRFPLKQVPTYILAQLVGATLASGTLRLIFNGKENHFPGTLASGSDLQAFVVEFITTFYLMFVISGVATDNRAIGELAGLAIGSTILLNVMIAGPITGASMNPARSLGPAIVHNEYKGIWVFMVAPVLGAVTGTWVYNCIRYTNKSVREITQSASFLRGGAK* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2902 270 Gene3D Glycerol uptake facilitator protein. 2 262 IPR023271 -
Lja6g2902 270 SUPERFAMILY Aquaporin-like 36 259 IPR023271 -
Lja6g2902 270 PANTHER AQUAPORIN NIP2-1 1 267 IPR034294 -
Lja6g2902 270 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2902 270 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 267 - -
Lja6g2902 270 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Lja6g2902 270 Pfam Major intrinsic protein 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2902 270 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2902 270 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2902 270 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2902 270 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2902 270 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2902 270 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2902 270 CDD MIP 39 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2902 Lja-Chr6 58127643 58131445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2902 35 270 Major Intrinsic Protein MIP AT5G37820 60.169 5.15e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2902 K09874 - gmx:100786924 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0898 4 7512342 7516128 Lja6g2902 6 58127643 58131445 PCT