Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2901 ATGGCTGGGAATTCAGCAAGCAATAATGGAAACCAGGATGTGGTTTTAAATGTTAATGCTGAAGCCCCTAAAAAGCGTGAAGTAATCAAAGAAACTGAAGACTGCGTGCCTCTTCTGAAGAAGTTTGTAGCAGAGCTGGTGGGGACCTACTTCTTGGTATTTGCAGGGTGTGCTGCCATTATAGTGAACCTTAGCAATGATAAGGTGGTGACACTTCCCGGGATTGCCATGGTTTGGGGACTGGCTGTTATGGTTTTGGTTCTATCTATTGGCCATATCTCTGGTGCTCATCTCAACCCAGCTGTTACCCTTGCTCATGCTACCACCAAAAGATTCTCCTTCAAGCAGGTACCAGCTTATTTACTTGCTCAATTTGTTGGAGCCATACTTGCAAGTGGAACTCTCAGACTCATATTTACTGGCAAGGAGAATCATTTTCCAGGAACACTTGCATCTGGTTCTGAGCTGCAAGCTTTTGTGTTTGAATTCATTTCCACTTTCCATCTCATGTTTGCAATTTCGGGAGTATCCACAGACAACAGAGCTATTGGTGAAATGGCTGGACTTGCAATTGGGGCTACGATACTGCTAAATGTGATAATTGCCGGACCAATCACTGGAGCATCGATGAATCCAGCAAGAAGCTTAGGACCTGCTATTGTGCACAGCGAGTACAAAGGAATATGGATATATTTGGTGTCACCAGTTCTAGGTGCTGTGGCGGGTACATGGTCGTATAATTTCATCAGGTACACCAACTACACTTTACATCAGAAACCAAGAGCCCCTCATTCCTAA 798 0.4436 MAGNSASNNGNQDVVLNVNAEAPKKREVIKETEDCVPLLKKFVAELVGTYFLVFAGCAAIIVNLSNDKVVTLPGIAMVWGLAVMVLVLSIGHISGAHLNPAVTLAHATTKRFSFKQVPAYLLAQFVGAILASGTLRLIFTGKENHFPGTLASGSELQAFVFEFISTFHLMFAISGVSTDNRAIGEMAGLAIGATILLNVIIAGPITGASMNPARSLGPAIVHSEYKGIWIYLVSPVLGAVAGTWSYNFIRYTNYTLHQKPRAPHS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2901 265 TIGRFAM MIP: MIP family channel proteins 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2901 265 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2901 265 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Lja6g2901 265 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2901 265 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2901 265 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2901 265 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2901 265 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2901 265 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2901 265 SUPERFAMILY Aquaporin-like 37 257 IPR023271 -
Lja6g2901 265 Gene3D Glycerol uptake facilitator protein. 2 262 IPR023271 -
Lja6g2901 265 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 257 - -
Lja6g2901 265 PANTHER AQUAPORIN NIP2-1 1 257 IPR034294 -
Lja6g2901 265 Pfam Major intrinsic protein 37 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2901 Lja-Chr6 58117647 58121680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2901 28 262 Major Intrinsic Protein MIP AT5G37810 53.191 8.57e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2901 K09874 - gmx:100812577 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0897 4 7507880 7511763 Lja6g2901 6 58117647 58121680 PCT