Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2900 ATGGCTGATAATTCAGGAAGCAGCGGAAATCACGAGGTGGTTTTTAATGTAAATGGTGATGCCACCAGAAAGTGTGAAAGCATTGAAGAAGACTGTGTCCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGATAGGGACATACTTCTTGATATTTGCTGGGTGTGCTTCTGTGGTGGTGAACCTTAATAATGACAAGGTGGTGTCACTTCCTGGGATTGCAATTGTTTGGGGACTGGCTGTAATGGTTTTGGTTTACTCTATTGGTCACATCTCTGGTGCACATTTCAACCCAGCTGTTACCATTGCTCATGCTACCACCAAAAGATTTCCCTTAAAGCAGGTACCAGCTTATATAATAGCTCAGGTAATTGGATCCACACTTGCAACTGGAACTCTCAGACTTATATTTAGTGGCAAGGAGAATCAGTTTACAGGGACACTCCCAGCTGGTTCTGACCTGCAAGCATTTGTGATTGAATTCATAATTACTTTCTTACTTATGTTCGTCGTCTCTGGAGTTGCCACTGATAACAGAGCGATTGGTGAGTTGGCTGGACTTGCAGTTGGCTCTACAGTTCTCCTAAATGTGTTGTTTGCCGGGCCTCCCACTGGAGCATCAATGAATCCAGCAAGGAGCTTAGGACCTGCTATTGTGCACAGTCAGTACAAAGGAATATGGATATACATCGTTTCACCGATTCTGGGTGCTGTGGCTGGTACATGGACCTACAGTTTCATCAGACAAACCAACAAGCCAGTGCGTGAAATTACCAAGAGTGCATCTTTCCTTAAAGCAGCAAAACGTGGGGAAGCTGAATGA 819 0.4457 MADNSGSSGNHEVVFNVNGDATRKCESIEEDCVPLLQKLVAEVIGTYFLIFAGCASVVVNLNNDKVVSLPGIAIVWGLAVMVLVYSIGHISGAHFNPAVTIAHATTKRFPLKQVPAYIIAQVIGSTLATGTLRLIFSGKENQFTGTLPAGSDLQAFVIEFIITFLLMFVVSGVATDNRAIGELAGLAVGSTVLLNVLFAGPPTGASMNPARSLGPAIVHSQYKGIWIYIVSPILGAVAGTWTYSFIRQTNKPVREITKSASFLKAAKRGEAE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2900 272 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2900 272 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2900 272 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2900 272 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2900 272 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2900 272 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2900 272 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 266 - -
Lja6g2900 272 Gene3D Glycerol uptake facilitator protein. 3 258 IPR023271 -
Lja6g2900 272 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Lja6g2900 272 SUPERFAMILY Aquaporin-like 34 257 IPR023271 -
Lja6g2900 272 CDD MIP 37 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2900 272 PANTHER AQUAPORIN NIP2-1 1 266 IPR034294 -
Lja6g2900 272 TIGRFAM MIP: MIP family channel proteins 41 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2900 272 Pfam Major intrinsic protein 33 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2900 Lja-Chr6 58112984 58114595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2900 19 270 Major Intrinsic Protein MIP AT5G37820 59.524 7.91e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2900 K09874 - gmx:100786924 453.751