Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2898 ATGGCTGATGAGGTGGTTTTGAATGTAAACAATGAAGCCTCTAAAAAATGTGATAGCATTGAAGAAGACTGTGTGCCACTTTTGCAGAAGTTGGTAGCAGAAGTGTTGGGCACATACTTTTTAATATTTGCAGGTTGTGCGTCGGTGGTGGTGAACCTTAATAATGACAAGGTGGTGACACTTCCTGGGATTGCAATTGTTTGGGGACTGGCTGTTATGGTTTTAGTTTACTCTATTGGTCACATCTCAGGTGCTCATTTCAACCCAGCTGTTACCATTGCTCATGTTACCACCAAAAGATTTCCCTTGAAGCAGGTACCAGCTTATATATTAGCTCAGGTCATTGGATCCACCCTTGCAAGTGGAACTCTCAGACTTATATTCAGTGGAAAAGATAACCATTTTACAGGAACACTTCCTGCTGGTTCTGACCTGCAAGCTTTTGTTGTTGAATTCATAATCACTTTCCTCCTCATGTTCGTCGTCTCCGGAGTTGCTACTGATAACAGAGCGATTGGCGAGTTGGCTGGGCTTGCAGTTGGATCTACAGTAATGCTAAATGTGTTGTTTGCAGGGCCAATTACTGGAGCATCAATGAACCCAGCAAGAAGCTTAGGACCTGCAATTGTGCATAATCAGTACAAAGGAATATGGATATACATGGTTTCACCAATTCTGGGTGCAGTGGCTGGTACATGGGCCTATAGTTTCATCAGAATCACCAACAAGCCTGTGCGTGAACTCACCAAGAGTTCCTCTTTCCTTAAAGGAGCTAAGTGA 780 0.4333 MADEVVLNVNNEASKKCDSIEEDCVPLLQKLVAEVLGTYFLIFAGCASVVVNLNNDKVVTLPGIAIVWGLAVMVLVYSIGHISGAHFNPAVTIAHVTTKRFPLKQVPAYILAQVIGSTLASGTLRLIFSGKDNHFTGTLPAGSDLQAFVVEFIITFLLMFVVSGVATDNRAIGELAGLAVGSTVMLNVLFAGPITGASMNPARSLGPAIVHNQYKGIWIYMVSPILGAVAGTWAYSFIRITNKPVRELTKSSSFLKGAK* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2898 259 ProSitePatterns MIP family signature. 86 94 IPR022357 -
Lja6g2898 259 Pfam Major intrinsic protein 25 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2898 259 SUPERFAMILY Aquaporin-like 26 249 IPR023271 -
Lja6g2898 259 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2898 259 PRINTS Major intrinsic protein family signature 105 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2898 259 PRINTS Major intrinsic protein family signature 150 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2898 259 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2898 259 PRINTS Major intrinsic protein family signature 68 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2898 259 PRINTS Major intrinsic protein family signature 29 48 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2898 259 TIGRFAM MIP: MIP family channel proteins 33 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2898 259 CDD MIP 29 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2898 259 Gene3D Glycerol uptake facilitator protein. 1 251 IPR023271 -
Lja6g2898 259 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 3 257 - -
Lja6g2898 259 PANTHER AQUAPORIN NIP2-1 3 257 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2898 Lja-Chr6 58107598 58109375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2898 1 256 Major Intrinsic Protein MIP AT5G37810 56.274 2.42e-102 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2898 K09874 - gmx:100786924 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2898 6 58107598 58109375 Lja6g2898 6 58107598 58109375 ECH