Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2897 ATGGCTGAAATTGCATCAAACGATGGAAACATAGAGGCAGGTCCAAATGTAGTGAACTTTAATTCCTCCAAAAAGTCTAATGATTGTGTTCCCCTTTTGCACAAGGTGGTAGCAGAGGTGATTGGCACCTACTTCATGGTGTTTGCAGGGTGTGGTGCGGTGGTGGTGAACCTTAACAACGACAAGGTGCTCACACTTCCTGGGATTGCAATTGTTTGGGGACTCACAGTCATGGTGTTGATTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCTGTCACCCTTGCTCATGCTTCCACCAGAAGGTTCCCTTTGAAACAGGTACCAGCTTATATAGTAGCTCAATTAATTGGATCCACACTTGCGAGTGGAGCCCTGAGACTTATGTTCAATGGCAAAGATGACCATTTCGTAGGAACACTCCCTGCTGGTTCTGACCTTCAAGCTTTTCTTATTGAGTTCATAATCACTTTCCAACTCATGTTTGTTATTTCTGCAGTAGCCACAGATAACAGAGCGATTGGTGAGTTGGCTGGAATTGCAGTTGGGTCAACGATAATGATAAATGTGTTGTTTGCCGGGCCAATCACCGGAGCATCATTGAATCCAGCAAGAAGCCTAGGACCTGCAATTGTGCACAATAATTACACAGCATTGTGGATATATTTGGTGTCGCCTGTTATGGGAGCAATGGCTGGTACTTGGGTTTATGATTTCATCAGGTGCAAGTGCTGA 744 0.4476 MAEIASNDGNIEAGPNVVNFNSSKKSNDCVPLLHKVVAEVIGTYFMVFAGCGAVVVNLNNDKVLTLPGIAIVWGLTVMVLIYSVGHISGAHFNPAVTLAHASTRRFPLKQVPAYIVAQLIGSTLASGALRLMFNGKDDHFVGTLPAGSDLQAFLIEFIITFQLMFVISAVATDNRAIGELAGIAVGSTIMINVLFAGPITGASLNPARSLGPAIVHNNYTALWIYLVSPVMGAMAGTWVYDFIRCKC* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2897 247 PANTHER AQUAPORIN NIP1-1-RELATED 21 245 - -
Lja6g2897 247 TIGRFAM MIP: MIP family channel proteins 38 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2897 247 Gene3D Glycerol uptake facilitator protein. 7 246 IPR023271 -
Lja6g2897 247 SUPERFAMILY Aquaporin-like 31 244 IPR023271 -
Lja6g2897 247 PANTHER AQUAPORIN NIP2-1 21 245 IPR034294 -
Lja6g2897 247 CDD MIP 35 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2897 247 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Lja6g2897 247 Pfam Major intrinsic protein 31 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2897 247 PRINTS Major intrinsic protein family signature 34 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2897 247 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2897 247 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2897 247 PRINTS Major intrinsic protein family signature 155 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2897 247 PRINTS Major intrinsic protein family signature 186 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja6g2897 247 PRINTS Major intrinsic protein family signature 223 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2897 Lja-Chr6 58104028 58106895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2897 26 244 Major Intrinsic Protein MIP AT5G37810 61.644 1.33e-90 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2897 K09874 - gmx:100786924 375.941