Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2895 ATGGCAACTAGCAAAAAAGACAAAGCCATAGGCATTGACCTTGGAACAACCTACAGCTGCGTCGCCGTGTGGAACCACAACCGTGTTGAGATCATTCCAAATGAACTAGGCAACCGCACCACCCCTTCCTACGTCGCCTTCACCGACACGGAAAGGCTAATGGGTGATGCTGCCATCAACCAATTAGCCCTGAATCCACACAACACTGTTTTTGACGCCAAACGTTTGATCGGTCGGCGATTCTCCGACCGATCAGTCCAGCAAGACATGAAACTCTGGCCTTTCAAGGTTGTCCAGGGAACAAGAGACAAGCCCATGATTTCTGTCACCTACAAGGGCGAAGAGAGAAAGCTTGCAGCTGAGGAGATATCTTCCATGGTGTTGTTCAAGATGAAGGAGGTTGCTGAAGCTTATCTGGGTCATGAAGTGAAACGTGCTGTGATCACTGTCCCTGCTTACTTCAACAACGCTCAGAGGCAGAGCACTAAGGATGCAGGGGAAATTGCAGGGTTCGATGTGATGAGGATCATCAATGAGCCAACTGCAGCTTCTATTGCTTATGGATTGGACAAGAAGGGATGGAGAAAAGGTGAACAGAATGTGCTGGTGTTTGATCTTGGTGGTGGTACTTTTGACGTTTCATTGGTGACTATCGATGAAGGAATTTTTAAGGTTAATGCCACAGTGGGAGATACCTATTTAGGTGGTGTGGATTTTGATAACAATTTGGTGAACTTTCTTGTGGATTTTTTTCAGAGGAAGCACAACAAGGATATCACTGAGAATGTTAAATCATTGAGGAGGCTAAGATTAGCTTGTGAGAAAGCTAAGAGGATTTTGTCTTCAACTTCCCAAACCACCATTGAGCTTGATTCTCTCTGTGGAGGGATTGATCTACATGTCACTGTTACGCAGGGTTTGTTCGAGAAATTGAACAAGGACTTGTTCGAGAAGTGCATGGAGATAGTGGAGAAGTGTTTGGTTGAGGCAAAGATTGGTAAAAGTGAAGTCCATGAGCTTGTTCTTGTAGGTGGGTCAACCAGAATTCCAAAAGTTCAGCAATTGTTGAAGGAGATGTTCAGTGTCCATGGCAGAGTCAAAGAGCTTTGCAAAAGCATCAATCCTGATGAAGCCGTGGCATATGGCGCGGCGGTTCAAGCAGCAATTTTGAGCTCTGAAGGAGACAAGAAAGTGGAGGAGCTGTTGTTGTTGGATGTAATGCCACTCAGTCTTGGGATTGAGGTTGTTGAGGGTGTTATGAGTGTGTTGATTCCAAAGAACACCACAATCCCCACCAAGAAAGAGAGAACTTTCAGAACAACTTCTGATAATCAGACCAGTGTTTGGATCAAAGTGTATGAAGGAGAAGGAGCGAAGACAGATAAAAACTTCTTTCTTGGGAAGTTTGAGCTTTCAGGGTTCTCTCCAGCACCAAAAGGAGACACAGAGATCAATGTTTGCTTTGATGTGGATGCTGATGGCATTGTGGAGGTTTCTGCTGAAGATATGAGCTTGCGGTTGAAAAAGACGATCACGATCACCAACAGGCTGGGAAGACTGAGCCAGGAAGAGATGAGGAGGATGGTGAGAGACGCGGCGCAGTATAAGGCAGAGGATGAGGAGGTGAGGAAGAAGGTGAAAGCGAAGAACTCTCTTGAGAACTATGCCTATGAGGCGAGGGACAGAGTGAAGAAGCTTGAGAAGATGGTGGAGGAAGTTATTGAATGGCTTGACAGAAACCAATTGGCTGAAGCTGAGGAGTTTGAGTATAAGAAGCAGGAGTTGGAAAAGGACATGCCTTTTGTATGA 1809 0.4561 MATSKKDKAIGIDLGTTYSCVAVWNHNRVEIIPNELGNRTTPSYVAFTDTERLMGDAAINQLALNPHNTVFDAKRLIGRRFSDRSVQQDMKLWPFKVVQGTRDKPMISVTYKGEERKLAAEEISSMVLFKMKEVAEAYLGHEVKRAVITVPAYFNNAQRQSTKDAGEIAGFDVMRIINEPTAASIAYGLDKKGWRKGEQNVLVFDLGGGTFDVSLVTIDEGIFKVNATVGDTYLGGVDFDNNLVNFLVDFFQRKHNKDITENVKSLRRLRLACEKAKRILSSTSQTTIELDSLCGGIDLHVTVTQGLFEKLNKDLFEKCMEIVEKCLVEAKIGKSEVHELVLVGGSTRIPKVQQLLKEMFSVHGRVKELCKSINPDEAVAYGAAVQAAILSSEGDKKVEELLLLDVMPLSLGIEVVEGVMSVLIPKNTTIPTKKERTFRTTSDNQTSVWIKVYEGEGAKTDKNFFLGKFELSGFSPAPKGDTEINVCFDVDADGIVEVSAEDMSLRLKKTITITNRLGRLSQEEMRRMVRDAAQYKAEDEEVRKKVKAKNSLENYAYEARDRVKKLEKMVEEVIEWLDRNQLAEAEEFEYKKQELEKDMPFV* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2895 602 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Lja6g2895 602 Gene3D - 10 388 - -
Lja6g2895 602 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja6g2895 602 Gene3D Actin; Chain A, domain 4 235 318 - -
Lja6g2895 602 Gene3D - 549 599 IPR029048 -
Lja6g2895 602 SUPERFAMILY Actin-like ATPase domain 198 390 IPR043129 -
Lja6g2895 602 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 548 597 IPR029048 -
Lja6g2895 602 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 397 553 IPR029047 -
Lja6g2895 602 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Lja6g2895 602 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 2 596 - -
Lja6g2895 602 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 395 548 IPR029047 -
Lja6g2895 602 Pfam Hsp70 protein 9 597 IPR013126 GO:0005524|GO:0140662
Lja6g2895 602 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Lja6g2895 602 Gene3D - 71 126 - -
Lja6g2895 602 Coils Coil 566 586 - -
Lja6g2895 602 PANTHER HEAT SHOCK PROTEIN 70KDA 2 596 IPR013126 GO:0005524|GO:0140662
Lja6g2895 602 Gene3D - 192 370 - -
Lja6g2895 602 PRINTS 70kDa heat shock protein signature 58 66 - -
Lja6g2895 602 PRINTS 70kDa heat shock protein signature 209 219 - -
Lja6g2895 602 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja6g2895 602 PRINTS 70kDa heat shock protein signature 481 497 - -
Lja6g2895 602 PRINTS 70kDa heat shock protein signature 146 166 - -
Lja6g2895 602 PRINTS 70kDa heat shock protein signature 400 419 - -
Lja6g2895 602 PRINTS 70kDa heat shock protein signature 36 48 - -
Lja6g2895 602 PRINTS 70kDa heat shock protein signature 373 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2895 Lja-Chr6 58091397 58093205 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2895 1 596 Calmodulin-binding Proteins AT1G16030 66.885 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2895 K03283 - gmx:100788531 930.243