Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2893 ATGCTTCAACATTATCAGTTTATTTTCTATGCCTATAAGTTCATTGCTTGTCTCAGTCTCAAGTCTCAACTCATTCACATCTTGAGAAGCCAAAAGACCAGATTTTCTCTGTTCTTTGCTCTGGAAAAAGGAAAAGCTATAGGCATTGACCTCGGCACAACCTATAGCTGCGTAGCTGTGTGGCAAAACCACCGTGTCGAGATCATTCCAAATGAACAAGGCAACCGTACCACCCCTTCTTATGTCGCCTTCACTGACACCAAAAGGTTAGTCGGCGATGCTGCCATGAACCAAGTAGCAAAGAATCCGCAGAACACCATTTTCGGCACCAAGCGTTTGATTGGTCAGGGATTCTCCGACCAATCAGTTCAGCAGGACATGAAGCTGTGGCCTTTCAAGGTTGTCCCGGGAACCAGAGACAAGCCCATGATTGTGGCCACCTACAGGGGTGAAGAGAGAAAGCTTACAGCTGAAGAGATATCTTCCATGATGCTGTTCAGGATGAAGGAGGCTGCTGAAACTTATCTGGGTCATGAAGTGAAACGTGCCGTGATCACTGTCCCTGCTTACTTCAACAACGCACAGAGGCAGAGCACTAAGGATGCAGGAGAAATCGCTGGTTTTGATGTGGTGAGGATCATCAACGAGCCAACAGCAGCTGCTATTGCTTATGGGTTGGACAAGAAGGAAAAGATGGAGGGTAGACAGAATGTGCTGGTATTTGATCTTGGTGGTGGTACTTTTGATGTTTCCTTGGTCACCATCGATGAAGGGATGTTTAAGGTTAAAGCCACAGTAGGAGATACCCATTTGGGTGGTCTGGATTTTGATAACAATTTGGTGAATCATGTTGTGGACGTGTTCAAGAGAAATCACAAGAAGGACATCAGTGAGAATGCCAAAGCACTGATGAGGTTAAGATCAGCGTGTGAGGAAGCTAAGAGAATGCTGTCTTCCACTTCTGAGACCACGATTGAGCTTGATTCTCTGTGTGAAGGGATTGATCTACGTGTCACTATTACGAGGGATTTGTTCGAGAAGTTGAACAAGGACTTGTTCAGAAAGTGCATTGAGACAGTGGAGAAGTGCCTGTTTGAGGCAAAGATTGGTAAAAGTGAAGTCCATGAGCTTGTGCTTGTAGGGGGGGGGGGTACTAGAATTCCAAAGGTTCAGGAATTGTTGAAGGAAATGTTCGGTGTCGATATATGGCCAAGTTTTTGCAAGAGCATCAGTCCTGATGAAGCTGTGGTATATGGTGCGGCGCTCCGGGCTGCAATGTTGAGTGGTGAAGTGGAGGATTTGTTGCTGATGGATGTGGTGCCACACAGTCTTGGAGTTGAGATTGATTGTGGTGTTATGTCTGTGTTGGTTCCAAGAAATAGCATGATCCCCACCAAGAATAAGAGCGCTTTCTCCATCTTCTTCAAAGATCAGAATTATATTTTGATAAAAGTGTATGAAGGAGAAGAGAGCAGGTCAAAGGAGAACTTGTTCCTCGGGGAGATTGAGGTGTCAGGGTTGTCTGAGATCAATGTTTGTTTTGAATTAGATACTGATGGCATTGTCAAGGTCACAGCAGAAGGTAAGGCAATGAGGCTGCAGGGAAGGTTGAGCCCGGAAGAGATGAGCAAGATAGTGAGAGATGCAGAGAGGTACAAGGCAGAAGATGAGGATCAGAAGGACTCGTTTGAGTATTATGCTTATGGGATTAGCAACAGATTGAATAAGCTTGAGAATTCTGCTTATGAGATGGGCGTCAATTTACAGAAGCTTGAGAAGTATGCTGATGAGATGAGATACAATTTGCGGAAGGTTGAAAAGTTAGTGGAGGATGTGTTGGAAAAGGTAAATGTTTTAGAGAGTGAAAGAGGGTGGATTGGAGAGTTAAAGATAGATGTATGA 1902 0.4474 MLQHYQFIFYAYKFIACLSLKSQLIHILRSQKTRFSLFFALEKGKAIGIDLGTTYSCVAVWQNHRVEIIPNEQGNRTTPSYVAFTDTKRLVGDAAMNQVAKNPQNTIFGTKRLIGQGFSDQSVQQDMKLWPFKVVPGTRDKPMIVATYRGEERKLTAEEISSMMLFRMKEAAETYLGHEVKRAVITVPAYFNNAQRQSTKDAGEIAGFDVVRIINEPTAAAIAYGLDKKEKMEGRQNVLVFDLGGGTFDVSLVTIDEGMFKVKATVGDTHLGGLDFDNNLVNHVVDVFKRNHKKDISENAKALMRLRSACEEAKRMLSSTSETTIELDSLCEGIDLRVTITRDLFEKLNKDLFRKCIETVEKCLFEAKIGKSEVHELVLVGGGGTRIPKVQELLKEMFGVDIWPSFCKSISPDEAVVYGAALRAAMLSGEVEDLLLMDVVPHSLGVEIDCGVMSVLVPRNSMIPTKNKSAFSIFFKDQNYILIKVYEGEESRSKENLFLGEIEVSGLSEINVCFELDTDGIVKVTAEGKAMRLQGRLSPEEMSKIVRDAERYKAEDEDQKDSFEYYAYGISNRLNKLENSAYEMGVNLQKLEKYADEMRYNLRKVEKLVEDVLEKVNVLESERGWIGELKIDV* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2893 633 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 42 616 - -
Lja6g2893 633 Gene3D - 229 407 - -
Lja6g2893 633 ProSitePatterns Heat shock hsp70 proteins family signature 1. 49 56 IPR018181 -
Lja6g2893 633 SUPERFAMILY Actin-like ATPase domain 45 228 IPR043129 -
Lja6g2893 633 Gene3D - 108 163 - -
Lja6g2893 633 PANTHER HEAT SHOCK PROTEIN 70KDA 42 616 IPR013126 GO:0005524|GO:0140662
Lja6g2893 633 ProSitePatterns Heat shock hsp70 proteins family signature 2. 240 253 IPR018181 -
Lja6g2893 633 Gene3D Actin; Chain A, domain 4 272 355 - -
Lja6g2893 633 SUPERFAMILY Actin-like ATPase domain 235 427 IPR043129 -
Lja6g2893 633 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 429 564 IPR029047 -
Lja6g2893 633 Coils Coil 588 622 - -
Lja6g2893 633 Gene3D - 47 422 - -
Lja6g2893 633 Pfam Hsp70 protein 46 614 IPR013126 GO:0005524|GO:0140662
Lja6g2893 633 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 423 611 IPR029047 -
Lja6g2893 633 ProSitePatterns Heat shock hsp70 proteins family signature 3. 378 392 IPR018181 -
Lja6g2893 633 PRINTS 70kDa heat shock protein signature 45 58 - -
Lja6g2893 633 PRINTS 70kDa heat shock protein signature 183 203 - -
Lja6g2893 633 PRINTS 70kDa heat shock protein signature 507 523 - -
Lja6g2893 633 PRINTS 70kDa heat shock protein signature 73 85 - -
Lja6g2893 633 PRINTS 70kDa heat shock protein signature 95 103 - -
Lja6g2893 633 PRINTS 70kDa heat shock protein signature 433 452 - -
Lja6g2893 633 PRINTS 70kDa heat shock protein signature 246 256 - -
Lja6g2893 633 PRINTS 70kDa heat shock protein signature 410 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2893 Lja-Chr6 58062930 58065022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2893 39 614 Calmodulin-binding Proteins AT1G16030 58.961 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2893 K03283 - gmx:100788531 735.717