Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2888 ATGGAATCGAAAAACCCCATAAGGTTTACGCTGGGGAAGCAGTCATCGCTGGCGCCAGAACGCCACAGTGAAGAAACGGATACACACAGCGATGGGGTTGCTATTGATTCGGGAGTGAGGTTGATGTATTTGGCCAACGAAGGCGATCTCGATGGGATCCGTGAGGTTTTGGAATCGGGTGTCAGTGTCAATTTCAGGGATATTGATGGCCGCACTGCTCTTCATATTGCGGCGTGTCAGGGTTTGACTCATGTTGTTGCTTTGTTGCTCGAGAAAGGTGCTCAGGTTGATACTAAAGATCGATGGGGTAGCACGCCACTTGCAGATGCTATATTCTATAAAAACAATGATGTGATCAAACTAATGGAGAAGCATGGAGCAAAGCCTCTGATGGCCTCTATGCATGTTAATCATGCACGTGAAATCCCAGAATATGAAATCGATCCTAAAGAACTTGATTTTACCAACAGTGTGGAGATATCAAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGGACCGAGGTTGCGGTAAAAAAGCTTGGGGAGGATGTGCTTATTGATGAGGAGAAAGTGAAGGCTTTCAGAGACGAGCTTGCTCTTTTCCAGAAGATCCGGCATCCAAATGTAGTCCAATTTCTGGGTGCTGTGACACAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTACTTGAACAGAAAAGGAGCTCTGAAACCAAGTACAGCTGTGAGATTTGCACTTGATATTGCTAGGGGAGTTGGTTATTTGCATGAAAATAAACCATCACCTATTATACATCGTGATCTTGAGCCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAGGCCTCTAACTTGCCAAGATACTTCTTGCCGCTATGTCGCTCCAGAGGTTTTCAAACAAGAAGAATATGGCACCAAAGTTGATGTGTTCTCATTTGCACTAGTTCTGCAAGAGATGATTGAAGGCTGCCCACCATTTCATGCAAAGCGTGAAAATGACGTTCCTAAGGTATATGCTGCTAAAGAGCGGCCACCATTCCACGCTCCAGCCAAGCGTTATTCCCATGGACTTCGAGAATTGATTGAAGAGTGCTGGAATGAGAACCCAGCAAAGCGGCCAACATTTAGGCAAATAATAATTAAGCTGGAGTCCATCTACAACACAATTGGTCAAAAAAGACGTTGGAAGGTTAGACCATTGAAATGCTTCCAGAATCTGGAAGCCTTATTGAAGAGGGATCATTCAGATAGAAGCAGTAGGGGCGGTTCATCTCGCTCCACAGCCAGCCGTAAATAA 1371 0.45 MESKNPIRFTLGKQSSLAPERHSEETDTHSDGVAIDSGVRLMYLANEGDLDGIREVLESGVSVNFRDIDGRTALHIAACQGLTHVVALLLEKGAQVDTKDRWGSTPLADAIFYKNNDVIKLMEKHGAKPLMASMHVNHAREIPEYEIDPKELDFTNSVEISKGTFCSALWRGTEVAVKKLGEDVLIDEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDYLNRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDRPLTCQDTSCRYVAPEVFKQEEYGTKVDVFSFALVLQEMIEGCPPFHAKRENDVPKVYAAKERPPFHAPAKRYSHGLRELIEECWNENPAKRPTFRQIIIKLESIYNTIGQKRRWKVRPLKCFQNLEALLKRDHSDRSSRGGSSRSTASRK* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2888 456 Pfam Ankyrin repeats (3 copies) 41 129 IPR002110 GO:0005515
Lja6g2888 456 Pfam Protein tyrosine and serine/threonine kinase 171 406 IPR001245 GO:0004672|GO:0006468
Lja6g2888 456 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Lja6g2888 456 SUPERFAMILY Protein kinase-like (PK-like) 154 407 IPR011009 -
Lja6g2888 456 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 438 - -
Lja6g2888 456 CDD STKc_MAP3K-like 160 404 - -
Lja6g2888 456 PIRSF ILK 1 430 - -
Lja6g2888 456 ProSiteProfiles Protein kinase domain profile. 119 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2888 456 MobiDBLite consensus disorder prediction 1 31 - -
Lja6g2888 456 Gene3D Phosphorylase Kinase; domain 1 146 229 - -
Lja6g2888 456 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 438 - -
Lja6g2888 456 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Lja6g2888 456 SUPERFAMILY Ankyrin repeat 40 131 IPR036770 -
Lja6g2888 456 SMART ANK_2a 69 98 IPR002110 GO:0005515
Lja6g2888 456 SMART ANK_2a 102 131 IPR002110 GO:0005515
Lja6g2888 456 SMART ANK_2a 36 65 IPR002110 GO:0005515
Lja6g2888 456 Gene3D - 9 144 IPR036770 -
Lja6g2888 456 Gene3D Transferase(Phosphotransferase) domain 1 230 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2888 Lja-Chr6 58023346 58032689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2888 8 428 MAP Kinase Kinase Kinase AT4G18950 67.681 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Lja6g2888 PK_Tyr_Ser-Thr 1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2888 - - gmx:100790126 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2888 6 58023346 58032689 Lja6g2888 6 58023346 58032689 ECH