LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g2887	ATGATGGATGAAAGCTTGCTTGCAGCAATGGATTTCCCAAACCAATCCATGTCAGATTCTCCACAGAGAAAGCTGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAATCGCCAAGTCACTTTCTGCAAGCGCAGAAATGGCCTTCTTAAGAAAGCTTATGAGCTATCTGTGCTTTGTGATGCAGAGGTTGCTTTGATTGTCTTCTCTAGCCGCGGTCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCAACAATTGATAGGTACAAGAAAGCATGTTCAGATTCATCTGGGGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTATCAGCAAGAGGCAGACAAACTGCGTGTGCAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTTTGGGCTCTATGAATGCCAAGGAACTCAAAAACCTGGAGACTAAGTTAGAAAAAGGAATTAGTAGGATTCGTTCCAAAAAGAATGAGCTACTATTTGCTGAAATTGAGTACATGCAGAAAAGGGAGATAGACTTGCACAATAACAACCAGCTTCTTCGGGCAAAGATAGCTGAAAGTGAGAGGAACCACCCTAACTTGAGCATTTTGGCTGGGAGCACCTCAAACTATGAGTCTATGCAATCTCAGCAGCAGCAACAGCAGCAGCAATTCGACTCTCGCGGCTACTTCCAAGTCACTGGATTACAACCCACTACACATACTCAGTATTCGCGCCAAGACCAGATCTCATTACAACCCAGTAGTCAGTATGCACGCCAAGACCACATGTCCCTTCAATTAGTGTAA	822	0.4428	MMDESLLAAMDFPNQSMSDSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGAGSASEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHPNLSILAGSTSNYESMQSQQQQQQQQFDSRGYFQVTGLQPTTHTQYSRQDQISLQPSSQYARQDHMSLQLV*	274

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g2887	273	SUPERFAMILY	SRF-like	26	97	IPR036879	GO:0003677\|GO:0046983
	Lja6g2887	273	MobiDBLite	consensus disorder prediction	245	273	-	-
	Lja6g2887	273	PANTHER	MADS BOX PROTEIN	19	253	-	-
	Lja6g2887	273	CDD	MADS_MEF2_like	26	95	IPR033896	GO:0000977\|GO:0045944
	Lja6g2887	273	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	34	81	IPR002100	GO:0003677\|GO:0046983
	Lja6g2887	273	SMART	madsneu2	25	84	IPR002100	GO:0003677\|GO:0046983
	Lja6g2887	273	Pfam	K-box region	109	195	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lja6g2887	273	ProSiteProfiles	MADS-box domain profile.	25	85	IPR002100	GO:0003677\|GO:0046983
	Lja6g2887	273	ProSiteProfiles	K-box domain profile.	111	201	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lja6g2887	273	Coils	Coil	111	138	-	-
	Lja6g2887	273	Gene3D	-	37	103	IPR036879	GO:0003677\|GO:0046983
	Lja6g2887	273	Coils	Coil	148	168	-	-
	Lja6g2887	273	PANTHER	AGAMOUSB	19	253	-	-
	Lja6g2887	273	ProSitePatterns	MADS-box domain signature.	27	81	IPR002100	GO:0003677\|GO:0046983
	Lja6g2887	273	PRINTS	MADS domain signature	27	47	IPR002100	GO:0003677\|GO:0046983
	Lja6g2887	273	PRINTS	MADS domain signature	47	62	IPR002100	GO:0003677\|GO:0046983
	Lja6g2887	273	PRINTS	MADS domain signature	62	83	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g2887	Lja-Chr6	57999103	58007308	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g2887	5	257	MADS-box Gene Family	AT3G58780	64.062	5.09e-108	311

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lja6g2887		K-box	1.7e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g2887	K09264		-	gmx:732595	397.127

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja6g2887	6	57999103	58007308	Lja6g2887	6	57999103	58007308	ECH
	Lja4g0889	4	7440436	7445968	Lja6g2887	6	57999103	58007308	PCT