Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2871 ATGGCACAGACAACCGACCCAGATGATCATGAAGGACATGTCAAGCCCAAAGTTGATGAAAAAGTTTCCTTTTTCAAGCTTTTCACCTTTGCGGACAATCTTGACAGGACTTTGATGATCATTGGTGTCATTTGTGCCATGGCTAACGGGTGGTCACAGCCTCTCATGACTCTCATTTTTGGGAAGCTAATCAACACTTTTGGCACCACTGATCCTTCCCACATTGTCGATGAAGTTTATAAGGTTGTATGGTTGTTTGTTTACCTGGCTATTGGGACTGGAATAGTATCATTTCTACAGGTATCATGTTGGATGGTGACTGGAGAAAGACAAGCCGCACGGATCCGTGGCTTGTACTTGAAAACAATACTAAAACAGGACATTGCCTTCTTTGACACTGAAACCTCATCCGGAGAGGTGATTGGAAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGAAAGTTTATACAACTTGCTTCAACCTTTATTGGTGGCTTCGTGATTGCCTTTACAAAAGGGTGGCAACTCTGTCTAGTTTTGCTTGCATGCATTCCTTGTATTGTCATTGTTGGTGGAATTATGTCAATGATGATGGCAAAAATGTCAAGCCGTGGGCAAGCTGCTTATACAGAAGCTGGAACTGTTGTAGAGCAAACAGTTGGAGCAATTAGAACAGTTGCCTCTTTTACTGGTGAGAAAAAAGCAATTGAGAAGTATCATAACAAGTTAAGAATTGCTTATAAAACTACGGTTCATCAAGGGTTGGCCTCAGGGTTAGGAATGGGAGTGCTTTTGATGATTATCTTTAGCACCTATGCACTTTCTATGTGGTATGGTTGCAAACTTATTATAGAGAAGGGATACAATGGTGGAGATGTCTTCAATATTATCATATCAATTAATACTGGTGGAATGTCACTTGGTCAAACAACCCCATGTCTCAATGCATTTGCATCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAGAGAAAGCCTAAAATTGATGCTTATGACACCAATGGTGTTGTCTTGGAAGACATCAAGGGAGATATTGAGCTCAAAGATGTTTACTTCAGATACCCAGCAAGGCCAGAAGTGCAGATTTTTGCAGGATTTTCGTTCTATATTCCAAGTGGCACAACTGCTGCTTTAGTGGGTCAGAGTGGCAGTGGGAAATCAACTATAATTAGTTTATTAGAAAGATTCTATGATCCTGAGGCTGGAGAAATACTTATAGATGGTGTGAATTTGAAGAGTTTTCAAGTTAGATGGATAAGAGAACAGATTGGGCTCGTTGGTCAAGAACCTGTCCTGTTCACAGCTAGCATCAAAGAGAACATAGCATATGGTAAGGATGGTGCAACAGATGAGGAGATAACAACAGCTATAACACTTGCCAATGCCAAAAATTTCATTGATAAACTGCCTCAGGGCATTGACACTATGCTTGGAGGACATGGAACTCAAATTTCTGGAGGGCAAAAGCAAAGAATCGCGATCGCGAGGGCAATTTTGAAAAACCCGAGAATCCTTCTTCTTGATGAAGCAACAAGTGCACTGGATGCTGAGTCTGAACGTGTTGTTCAAGAAGCATTAGAAAAAGTCATGACAAAAAGGACTACTGTAGTTGTCGCGCATCGCTTGACAACTATTAGAAATGCTGACACCATTGCAGTGGTTCATCAGGGAAAAATTGTGGAAAAAGGAACTCATGATGAGTTAATCAAGGATCCTGAGGGTGCTTATTCTCAGCTCATTCGTCTACAAGAAGGAGCTAAGAAGGAAGAAGGAAGTCGTAATTCTGAAGCAGACAAGTCCAAGAACAGTTTTAGTTTAGAAAGTCACATGGCTAGATCTTCCACCCAAAGAACATCATTTGCAAGATCAATTAGCCAAGCTTCTTCAAGCAGTAGAGACTCTCTTTCACTTAGCTTTCCTCTTCCTTATCAAATTTCTGTACATGATTCTGTAGAAGGGGCTAACGGTGATCACAAAAGTAGCGAACTTGATACTGTGAAGCGTCAAAAGGTTTCTATTAAACGCTTGGCCAAGTTGAACAAGCCTGAGGTTCCTATCTTACTACTTGGATCCATTGCTGCAGCAGCACATGGTGTTATACTCCCTATATTTGGCCTCTTGCTTTCATCAGCTATTAATACATTCTATGAACCTCCAGAACAACTTAGAAAAGATTCTGAGTATTGGTCACTTCTATTTTTGGGTTTGGGTGTTGCTACTCTGGCGGCTATACCAATCCAGAACTACTTATTTGGGATTGCTGGTGGAAAGCTCATAGAAAGGATCCGGTCATTGACATTTAAGAAGGTGGTGCACCAAGAAATCAGTTGGTTTGATCATCCTTCAAATTCAAGTGGTGCAGTCAGTGCAAGGTTAGCTACTGATGCTTCAACAGTGAGAACTCTTGTTGGTGACACCTTGGCCCTCATTGTGCAAAACATAGCAACAGTCGCAGCAGGTATAATTATAGCATTCTCTGCTAATTGGAGGCTCTCTTTGGTAATTCTGGCCTTGTCACCTTTGATCCTTATGCAAGGGTTCTGTCAGATGAGGTTTCTTAAAGGATTCAGTTCAGATGCCAAGGAGAAATATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACTGTTGCATCATTTTGCGCAGAACCAAAGGTCATGGATCTGTACCAGAAGAAATGTTCAGAGCCAACAAAACAAGGTGTTAGGTCGGGGCTTATTAGTGGTGCAGGATTAGGTTTCTCATTTTTTGCTCTATACTGCACAAATGCTGTCTGTTTCTACGTAGGATCTTATCTAGTGCAAAACGGGAAGGCCACATTTGGAGAGGTTTTCAAGGTTTTCTTTTCTTTGACAATTACAGCAGTTGGTGTTTCCCAAACTAGTGCCTTGGCGCCAGACACTAACAAGGCCAAAGATTCCACAGCTTCAATATTTGAAATTCTTGACAGCAAACCAAAGATAGACTCTAGCAGTGATGAGGGCATGACACTAGAAACTGTAAAAGGTGAAATTGAACTTCAACAAGTCAGCTTTAGTTACCCAACAAGGCCTAATATTCAAATTTTCAGAGATTTGTGTCTAAGCATTCCCGCTGGAAAGACTGTTGCATTGGTTGGAGAAAGTGGTAGTGGTAAATCAACAGTTATCAGCCTCCTAGAGAGATTTTATAATCCTGATTCTGGAAGTGTATTACTTGATGGGGTGGATATAAAAAAGTTCAAATTAAGCTGGTTGAGGAAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAACGAAAGCATTCGGGCTAACATTGCTTATGGCAACGAGGGAGGTGCTTCAGAGGAAGAGATAATTTCAGCAGCACAAGCAGCCAATGCACACAAGTTCATAAGTTCTCTTCCAAATGGTTATGACACACCAGTTGGAGAAAGAGGGACACAGTTGTCTGGAGGGCAAAAGCAGCGAATTGCCATTGCAAGAGCCATTCTGAAAGACCCTAGAATCCTTTTGCTAGATGAGGCAACAAGTGCACTTGATGCGGAATCGGAGCGTGTAGTTCAAGAGGCTCTAGACAGGGTGAGAGTGAGTAGAACTACAGTTGTGGTAGCTCACCGTTTGGCAACAATAAAAGGTGCTGATGTAATAGCAGTAGTGAAGAATGGGGTGATTGCTGAGAAGGGAGGACATGATGTATTGATGGGGATTTATGGTGGAGTTTATGCTTCATTGGTAGCTCTCCATAGTAATGCATCATAG 3807 0.4171 MAQTTDPDDHEGHVKPKVDEKVSFFKLFTFADNLDRTLMIIGVICAMANGWSQPLMTLIFGKLINTFGTTDPSHIVDEVYKVVWLFVYLAIGTGIVSFLQVSCWMVTGERQAARIRGLYLKTILKQDIAFFDTETSSGEVIGRMSGDTILIQDAMGEKVGKFIQLASTFIGGFVIAFTKGWQLCLVLLACIPCIVIVGGIMSMMMAKMSSRGQAAYTEAGTVVEQTVGAIRTVASFTGEKKAIEKYHNKLRIAYKTTVHQGLASGLGMGVLLMIIFSTYALSMWYGCKLIIEKGYNGGDVFNIIISINTGGMSLGQTTPCLNAFASGQAAAYKMFETIKRKPKIDAYDTNGVVLEDIKGDIELKDVYFRYPARPEVQIFAGFSFYIPSGTTAALVGQSGSGKSTIISLLERFYDPEAGEILIDGVNLKSFQVRWIREQIGLVGQEPVLFTASIKENIAYGKDGATDEEITTAITLANAKNFIDKLPQGIDTMLGGHGTQISGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEKVMTKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGTHDELIKDPEGAYSQLIRLQEGAKKEEGSRNSEADKSKNSFSLESHMARSSTQRTSFARSISQASSSSRDSLSLSFPLPYQISVHDSVEGANGDHKSSELDTVKRQKVSIKRLAKLNKPEVPILLLGSIAAAAHGVILPIFGLLLSSAINTFYEPPEQLRKDSEYWSLLFLGLGVATLAAIPIQNYLFGIAGGKLIERIRSLTFKKVVHQEISWFDHPSNSSGAVSARLATDASTVRTLVGDTLALIVQNIATVAAGIIIAFSANWRLSLVILALSPLILMQGFCQMRFLKGFSSDAKEKYEEASQVANDAVGSIRTVASFCAEPKVMDLYQKKCSEPTKQGVRSGLISGAGLGFSFFALYCTNAVCFYVGSYLVQNGKATFGEVFKVFFSLTITAVGVSQTSALAPDTNKAKDSTASIFEILDSKPKIDSSSDEGMTLETVKGEIELQQVSFSYPTRPNIQIFRDLCLSIPAGKTVALVGESGSGKSTVISLLERFYNPDSGSVLLDGVDIKKFKLSWLRKQMGLVGQEPILFNESIRANIAYGNEGGASEEEIISAAQAANAHKFISSLPNGYDTPVGERGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVRVSRTTVVVAHRLATIKGADVIAVVKNGVIAEKGGHDVLMGIYGGVYASLVALHSNAS* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2871 1268 CDD ABC_MTABC3_MDL1_MDL2 1025 1261 - -
Lja6g2871 1268 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 334 - -
Lja6g2871 1268 Gene3D ABC transporter type 1, transmembrane domain 992 1014 IPR036640 GO:0005524|GO:0016021
Lja6g2871 1268 Gene3D ABC transporter type 1, transmembrane domain 683 991 IPR036640 GO:0005524|GO:0016021
Lja6g2871 1268 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Lja6g2871 1268 Pfam ABC transporter 382 528 IPR003439 GO:0005524
Lja6g2871 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 704 990 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2871 1268 SMART AAA_5 388 574 IPR003593 -
Lja6g2871 1268 SMART AAA_5 1052 1246 IPR003593 -
Lja6g2871 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2871 1268 Pfam ABC transporter transmembrane region 39 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2871 1268 Pfam ABC transporter transmembrane region 704 976 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2871 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 599 IPR027417 -
Lja6g2871 1268 MobiDBLite consensus disorder prediction 622 641 - -
Lja6g2871 1268 SUPERFAMILY ABC transporter transmembrane region 26 345 IPR036640 GO:0005524|GO:0016021
Lja6g2871 1268 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 17 1265 - -
Lja6g2871 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1014 1262 IPR027417 -
Lja6g2871 1268 Gene3D - 1015 1265 IPR027417 -
Lja6g2871 1268 Gene3D - 351 600 IPR027417 -
Lja6g2871 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Lja6g2871 1268 Pfam ABC transporter 1045 1193 IPR003439 GO:0005524
Lja6g2871 1268 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 17 1265 IPR039421 -
Lja6g2871 1268 SUPERFAMILY ABC transporter transmembrane region 686 1009 IPR036640 GO:0005524|GO:0016021
Lja6g2871 1268 CDD ABC_6TM_Pgp_ABCB1_D2_like 693 1008 - -
Lja6g2871 1268 ProSitePatterns ABC transporters family signature. 1165 1179 IPR017871 GO:0005524
Lja6g2871 1268 Gene3D ABC transporter type 1, transmembrane domain 26 630 IPR036640 GO:0005524|GO:0016021
Lja6g2871 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1025 1262 IPR003439 GO:0005524
Lja6g2871 1268 MobiDBLite consensus disorder prediction 601 641 - -
Lja6g2871 1268 MobiDBLite consensus disorder prediction 601 621 - -
Lja6g2871 1268 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2871 Lja-Chr6 57888289 57893819 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2871 15 1264 Calmodulin-binding Proteins AT2G36910 45.087 0.0 1067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2871 K05658 - gmx:100792531 2030.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2871 6 57888289 57893819 Lja6g2871 6 57888289 57893819 ECH