Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2870 ATGGCAGACAACAACAACAACAACAACAACAACAACACAGAGCCACCTTTACATTCTACATCTTCACAAGAACAACAGAATGATGAAGGAGCTGCAACCAAAAGAAAATCCAACAAGAACAAGAAAGTTGCGTTCTACAAACTGTTTGCATTCGGTGATCGTCTTGACGTGACGTTGATGATCATTGGCACCATCTGCGCCGCCGCTAATGGAATGACGCAGCCTATGATGACCCTCATATTCGGGAAGCTCGTCAATACTTTTGGTTCCACAGATAAATCCAGAATTGTCCATGAAGTGACTAAGGTTGTGTTACTATTTGTTTACCTGGCTGTGGGATCCGGAATAGCTTCATTTCTACAGGTATCTTGTTGGATGGTAACAGGAGCAAGACAAGCCACAAGGATCCGTGGCTTGTACTTGAAAACCATATTGAAGCAGGACATTGCCTACTTTGACACTGAAACCACAACTGGTGAAGTGATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTGGCTTCAACTTTTCTTGGTGGCTTTGTGATTGCCTTCATAAAGGGATGGCAACTGGCTGTAGTTTTGCTTGCATGTATACCGTGTGTTATCACTGCTGGTGCAGTCATGTCCATAATGATGTCTAAAATGTCAGCTCGTGGCCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGACCAAACAGTGGGAGCCATTAGAACGGTTGCATCTTTTACCGGCGAGAAAAGAGCAACAGAGAATTATAATAGCAAGCTAAAAATTGCTTATAAATCCATGGTTCAACAAGGAATTGCCTCAGGTTTGGGAATGGGAGTGCTTTTGATGATTACCTTCTGCACCTATGGACTTGCCATGTGGTATGGTTCCAAACTGGTTATTGAGAAAGGATTCAGTGGTGGAAATGTCTTGACTGTAATCATAGCTCTTATGACTGGGGGAATGTCATTGGGTCAGGCATCCCCAAGCCTAAATGCATTTGCTACAGGACAAGCAGCAGCATATAAGATGTTTGAGACAATTAAGAGAAAGCCTAAAATTGATGCTTATGACACCAGTGGCGTTGTCTTGGAAGACATTAAGGGCGATATTGAACTCAAAGATGTTTACTTCAGCTACCCTGCAAGGAAGGATGTGCAGATCTTTGCTGGATTCTCATTATCTGTTCCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGAAGTGGGAAGTCTACTGTAATCAGTTTACTAGAAAGATTCTATGATCCTGATTCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAGTTTTCAAGTTAGATGGATAAGAGAACAGATTGGGCTGGTTAGTCAAGAACCTATCTTGTTTACAGCTAGTATCAAAGAGAACATAGCTTACGGGAAAGAAGGCGCAACTGATGAGGAGATAAAACAAGCAATAACACTTGCCAATGCCAAAAATTTCATTGACAAGCTCCCTCTGGGCCTTGACACAATGGCAGGGCAGAGTGGGACTCAACTTTCTGGAGGGCAAAAGCAAAGAATTGCGATTGCAAGGGCGATTTTGAAGAACCCGAGAATCCTTCTCCTTGATGAAGCAACAAGTGCACTGGATTCTGAGTCTGAACGTGTTGTTCAAGAAGCATTGGAAAAAGTGATGACAAAAAGGACTACTGTGGTTGTTGCGCATCGCTTGACGACCATTAGAAACGCTGACACCATAGCCGTGGTTCATCAGGGAAAAATCGTGGAAAAAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGTGCTTATTCTCAGCTCATTCGTCTACAAGAAGGAGAAAAAGAAGCTGAAGGTAGCCGGAACTCAGATGCAGATAACAGTTTAAATTTAGATAGTCACATAACTCGATCTTCCAGCCAGAGAACACCCTTTGTGAGATCAACAAGCCATGGTTCATCCGCAAGTAGACGCTCCCACTCACGTAGCTTTTCTCGAAGATTTTCAATTGTGTCCGGAGAAATAGAACAAGGGGATATTGAAAAATGCCATCCTGATAATAACAAGCCCAAAAAGGTTTCTTTAAAACGTTTGGCCTACTTGAATAAGCCTGAGGTTCCTATCTTACTACTTGGATCCTTTGCTGCAATAGTACACGGTGTGGTGTTTCCAATATTTGGCGTCTTGTTTTCATCGGCCATTACTATGTTCTTTGAACCTCCAGAAAAGCAGAAGAAAGATGCAAGATTCTGGGCACTCCTATATGTTGGTTTAGGTTTAGTTACTCTGGTGGTTATACCTCTTCAGAACTACTTATTTGGGATTGCTGGTGGAAAACTTATAGAAAGAATTCGTTCATTGACATTCAAAAAGGTTGTGCACCAAGAAATCAGTTGGTTTGATGACCCTGCGAATTCAAGTGGTGCAGTTGGTGCAAGGTTGTCTACTGATGCTTCAGCAGTGAAAAGTCTTGTTGGTGACACCTTGGCCCTCATTGTACAAAACATAACAACAATTACAGCAGGTGTAATCATAGCACTCACTGCTAATTGGGCACTTGCTTTGATAGTTATAGCCGTCTCACCAGGAATCCTTGCACAAGGATACCTTCAGATGAAGTTTCTTAAAGGATTCAGTGCGGATGCCAAGGAGAAATATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACTGTTGCATCATTTTGTGCGGAGTCGAAGGTGATGGACATGTACCAGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCAGTCGGGGCTTGCAAGTGGTGCAGGATATGGTTTCTCATTTTTTCTTCTACACTGCACAAATGCTTTATGTTTCTATGCAGGATCTCGTCTTGTGGCGAGGGGGCAAGCAAATTTTGCTGAGGTTTTCAGGGTTTTCTTTTGTTTAACAATCACAGCTATTGGGGTTTCCCAGTCAAGTGCCTTGGCACCAGACACAGCCAAGGCCAAAGATTCCACTGCTTCAATATTCGAAATTCTTGACAGAAAACCTACAATTGACTCCAGCAGCAATAAGGGCAAATCACTAGAAAATGTTGTTGGTGACATTGAACTTCAACATGTCAGCTTTAGCTACCCATCAAGGCCTCATATTCAAATTTTCAAGGATTTGAGCTTAAGCATTCCATCTGGAAAGACTGTTGCATTGGTTGGAGAAAGTGGTAGTGGAAAATCAACAGTTATCAGCCTCTTAGAGAGATTTTATAACCCTCACTTTGGAAGCATCCTACTTGATGGAGTGGATATCAAAGAGTTAAGATTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCAATTCTTTTCAATGAAAGCATTCGCGCTAACATTGCTTATGGCAAAGAGGGTGGTGTTGCCGATGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAACTTCATAAGTTCTCTTCCAAATGGTTATGATACCTCAGTTGGAGAAAGAGGTACACAATTGTCTGGAGGGCAAAAGCAGCGTATTGCCATTGCAAGAGCGATGCTGAAGGGCCCCAGAATCCTTCTACTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCGGAACGCGTAGTTCAAGAGGCGCTGGACAAAGTCAGTGTGGACAGAACTACTGTGGTGGTAGCTCATCGTCTAACAACAATAAGAGGGGCTGACGTTATAGCAGTGATTAAAAATGGGGTGGTTGCTGAAAAGGGAAGGCATGATGCGTTGATGAAGATCACTGGTGGAGTTTATGCTTCATTGGTATCTCTACATTCAAGTGCATCATGA 3852 0.4291 MADNNNNNNNNNTEPPLHSTSSQEQQNDEGAATKRKSNKNKKVAFYKLFAFGDRLDVTLMIIGTICAAANGMTQPMMTLIFGKLVNTFGSTDKSRIVHEVTKVVLLFVYLAVGSGIASFLQVSCWMVTGARQATRIRGLYLKTILKQDIAYFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLASTFLGGFVIAFIKGWQLAVVLLACIPCVITAGAVMSIMMSKMSARGQAAYAEAGNVVDQTVGAIRTVASFTGEKRATENYNSKLKIAYKSMVQQGIASGLGMGVLLMITFCTYGLAMWYGSKLVIEKGFSGGNVLTVIIALMTGGMSLGQASPSLNAFATGQAAAYKMFETIKRKPKIDAYDTSGVVLEDIKGDIELKDVYFSYPARKDVQIFAGFSLSVPSGTTAALVGQSGSGKSTVISLLERFYDPDSGEVLIDGVNLKSFQVRWIREQIGLVSQEPILFTASIKENIAYGKEGATDEEIKQAITLANAKNFIDKLPLGLDTMAGQSGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDSESERVVQEALEKVMTKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGTHDELIKDADGAYSQLIRLQEGEKEAEGSRNSDADNSLNLDSHITRSSSQRTPFVRSTSHGSSASRRSHSRSFSRRFSIVSGEIEQGDIEKCHPDNNKPKKVSLKRLAYLNKPEVPILLLGSFAAIVHGVVFPIFGVLFSSAITMFFEPPEKQKKDARFWALLYVGLGLVTLVVIPLQNYLFGIAGGKLIERIRSLTFKKVVHQEISWFDDPANSSGAVGARLSTDASAVKSLVGDTLALIVQNITTITAGVIIALTANWALALIVIAVSPGILAQGYLQMKFLKGFSADAKEKYEEASQVANDAVGSIRTVASFCAESKVMDMYQKKCSGPEKQGVQSGLASGAGYGFSFFLLHCTNALCFYAGSRLVARGQANFAEVFRVFFCLTITAIGVSQSSALAPDTAKAKDSTASIFEILDRKPTIDSSSNKGKSLENVVGDIELQHVSFSYPSRPHIQIFKDLSLSIPSGKTVALVGESGSGKSTVISLLERFYNPHFGSILLDGVDIKELRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGVADDEIIAAAQAANAHNFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKGPRILLLDEATSALDAESERVVQEALDKVSVDRTTVVVAHRLTTIRGADVIAVIKNGVVAEKGRHDALMKITGGVYASLVSLHSSAS* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2870 1283 SMART AAA_5 1067 1254 IPR003593 -
Lja6g2870 1283 SMART AAA_5 409 595 IPR003593 -
Lja6g2870 1283 SUPERFAMILY ABC transporter transmembrane region 47 366 IPR036640 GO:0005524|GO:0016021
Lja6g2870 1283 Gene3D ABC transporter type 1, transmembrane domain 105 1014 IPR036640 GO:0005524|GO:0016021
Lja6g2870 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1032 1278 IPR027417 -
Lja6g2870 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 60 355 - -
Lja6g2870 1283 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 37 1280 IPR039421 -
Lja6g2870 1283 MobiDBLite consensus disorder prediction 1 28 - -
Lja6g2870 1283 SUPERFAMILY ABC transporter transmembrane region 699 1021 IPR036640 GO:0005524|GO:0016021
Lja6g2870 1283 CDD ABC_MTABC3_MDL1_MDL2 382 620 - -
Lja6g2870 1283 Pfam ABC transporter 1059 1208 IPR003439 GO:0005524
Lja6g2870 1283 MobiDBLite consensus disorder prediction 1 36 - -
Lja6g2870 1283 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 37 1280 - -
Lja6g2870 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 708 1023 - -
Lja6g2870 1283 ProSitePatterns ABC transporters family signature. 1180 1194 IPR017871 GO:0005524
Lja6g2870 1283 Pfam ABC transporter transmembrane region 719 990 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2870 1283 Pfam ABC transporter transmembrane region 60 332 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2870 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 719 1005 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2870 1283 ProSitePatterns ABC transporters family signature. 521 535 IPR017871 GO:0005524
Lja6g2870 1283 Pfam ABC transporter 403 549 IPR003439 GO:0005524
Lja6g2870 1283 CDD ABC_MTABC3_MDL1_MDL2 1040 1276 - -
Lja6g2870 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1040 1277 IPR003439 GO:0005524
Lja6g2870 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2870 1283 Gene3D - 1030 1282 IPR027417 -
Lja6g2870 1283 MobiDBLite consensus disorder prediction 621 674 - -
Lja6g2870 1283 Gene3D - 380 651 IPR027417 -
Lja6g2870 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 618 IPR003439 GO:0005524
Lja6g2870 1283 MobiDBLite consensus disorder prediction 632 674 - -
Lja6g2870 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 620 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2870 Lja-Chr6 57864242 57870414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2870 8 1279 Calmodulin-binding Proteins AT2G36910 44.755 0.0 1066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2870 6 57864242 57870414 Lja6g2870 6 57864242 57870414 ECH