Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2864 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCTCAGGAAGGGGAAAAGCGAGTTCTAGATTCAGAGCTTTGGCATGCTTGTGCTGGTCCCCTTGTCTCTTTGCCAGCACTTGGAAGCCGCGTGGTGTACTTTCCACAAGGTCACAGTGAACAGGTAGCTGTGTCAACTAACAAGGAAGTGGATGCTCATATTCCAAACTATCCAAGCTTACCTCCTCAACTGATTTGTCAACTTCATAATGTGACTATGCATGCTGATGCTGAGACTGATGAAGTTTATGCTCAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAAGCATACCTTCCAGCAGAGTTGGGCACTCCCAGTAAACAGCCAACAAACTATTTCTGCAAGACTTTGACTGCTAGTGACACAAGCACTCATGGGGGATTCTCTGTGCCTCGCCGGGCAGCTGAAAAAGTGTTTCCTCCATTGGACTTCTCCCAACAGCCTCCTGCTCAGGAGCTAATTGCAAGGGATTTGCATGGCAATGAATGGAAATTCAGACATATCTTCCGGGGGCAGCCCAAGAGGCATCTACTTACTACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAATTGCTTCTGGGGATCCGCCGTGCTAATCGACCACAGACTGTTATGCCTTCATCAGTTCTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCGGCAGCTCATGCAGCTGCGACAAATAGTCGCTTCACCATTTTCTACAACCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGTGAAGTATGTTAAAGCTGTATATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTGTTTGAAACAGAGGAGTCTAGTGTGCGGCGATACATGGGTACAATAACAGGCATTAGTGATCTGGATCCTGCCCGGTGGCCGAATTCACATTGGCGCTCAGTGAAGGTTGGGTGGGATGAATCCACCGCAGGAGAGAGGCAACCTAGGGTTTCTTTATGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCCCCATTCCCTCTTAGGCTAAAACGACCCTGGCCTCCGGGATTGCCTTCATTCCATGCAGGCATGAAGGATGATGAATTTGGCTTAAACTCTCCTCTGTTGTGGCTCCGGGATTCCGATAGAGGGATGCAGTCTCTTAATTTTCAGGGTATGGGGGTTAATCCGTGGATGCAGCCAAGATTTGATCCCTCCATGCTGAATATGCAAACAGATATGTATCAAGCTGTTGCTGCAGCTGCACTTCAGGACATGAGGAGTGTAGATCCTTCCAAACAGCATCCTAGTTCCTTACTTCAGTTTCAGCAACCACAGAACTTCCCGAACAGAACTGCTTTAATGCAGGCCCAGATGTTGCAACAGTCACAGCCTCAACAGGTTTTTCAAAATAATCAGGAGAATCAACAACTGCTGCAATCTCAGTCTCATCTTCAGCAGCACCTACAGCATCAGCACTCATTCAATGGTCAGACTCAGAATCATAATCACAATCAGCAGCAGCAGCAGCAACAACAACAACAAACTCAACAGCAAGTGGTAGATAATCAGCAGATTTGCAATGCCGGCTCTACGATGTCTCAGTTTGTTTCAGCACCTCAACCTCAATCATCACCCACACAAGCTCAATCTTCACTGAGCCAACAGCAAAGTTTTTCCGATTCAAATGTGAACCCTGTGACGACTATTGTTTCTCCCTTGCACAGTCTCATGGGTTCATTTCCCCAGGATGAAACATCCCACCTTCTGAATCTTTCAAGAACAAGCTCTTGGGTTCCTGTTCAAAATTCAACAGGATGGCCCTCCAAGCGTATTGCGGTGGATCCTCTTCTTTCTTCTGGAGCATCTGTTCTGCCTCAGGTGGAGCAGTTGGGGCAGCCGCAAAACACCATATCTCAAAATGTTGTTACATTGCCACCATTTCCTGGCAGGGAATGCTCAATAGACCAAGGGAGCAATGATCCCCAAAATCATCTTTTATTTGGTGTTAATATTGAGCCTTCGTCTCTTCTAATGCATAATGGAATTTCAAACCTTAAGGGGATCAGCAGCAACAGTGATTCCCCAACCTTGCCCTATCAGTCTTCCAATTACCTGAATACCACAGGCCCTGATTCTTCATTGAATCATGGAATAACACAGAGCATTGACGAATCTGGCTTCCTGCAGTCGCCAGAAAATGCGGGGCAAGGAAACCCACAGAACAAGACCTTTGTGAAGGTCTATAAATCAGGGTCCTTCGGAAGATCGCTGGATATCACCAAATTCAGCAGCTACCCTGAGCTGCGTGGTGAGCTTGCTCGAATGTTTGGGCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAGTGACGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATCAAGATACTTTCGCCCCAGGAAATGCAGCAAATGGGGAACACCGGTCTCGAGCTTTTGAACTCAGTTCCAAACCAAAGGCTCTCTAATGGCGTCTGTGATGATTACATGAGCCGTCAGGACCCGAGAAATTTAGGCTCTGGGATAACAACTGTAGGGTCTTTAGACTACTGA 2703 0.4702 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPALGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNVTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLVKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGMKDDEFGLNSPLLWLRDSDRGMQSLNFQGMGVNPWMQPRFDPSMLNMQTDMYQAVAAAALQDMRSVDPSKQHPSSLLQFQQPQNFPNRTALMQAQMLQQSQPQQVFQNNQENQQLLQSQSHLQQHLQHQHSFNGQTQNHNHNQQQQQQQQQQTQQQVVDNQQICNAGSTMSQFVSAPQPQSSPTQAQSSLSQQQSFSDSNVNPVTTIVSPLHSLMGSFPQDETSHLLNLSRTSSWVPVQNSTGWPSKRIAVDPLLSSGASVLPQVEQLGQPQNTISQNVVTLPPFPGRECSIDQGSNDPQNHLLFGVNIEPSSLLMHNGISNLKGISSNSDSPTLPYQSSNYLNTTGPDSSLNHGITQSIDESGFLQSPENAGQGNPQNKTFVKVYKSGSFGRSLDITKFSSYPELRGELARMFGLEGELEDPVRSGWQLVFVDRESDVLLLGDGPWPEFVNSVWCIKILSPQEMQQMGNTGLELLNSVPNQRLSNGVCDDYMSRQDPRNLGSGITTVGSLDY* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2864 900 Gene3D - 291 363 - -
Lja6g2864 900 MobiDBLite consensus disorder prediction 724 743 - -
Lja6g2864 900 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Lja6g2864 900 Gene3D - 125 228 IPR015300 -
Lja6g2864 900 ProSiteProfiles PB1 domain profile. 767 851 IPR000270 GO:0005515
Lja6g2864 900 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Lja6g2864 900 Gene3D - 763 856 - -
Lja6g2864 900 MobiDBLite consensus disorder prediction 500 545 - -
Lja6g2864 900 SUPERFAMILY CAD & PB1 domains 763 842 - -
Lja6g2864 900 PANTHER AUXIN RESPONSE FACTOR 1 880 - -
Lja6g2864 900 Pfam AUX/IAA family 757 852 IPR033389 -
Lja6g2864 900 MobiDBLite consensus disorder prediction 558 589 - -
Lja6g2864 900 CDD B3_DNA 126 227 IPR003340 GO:0003677
Lja6g2864 900 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 880 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja6g2864 900 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja6g2864 900 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Lja6g2864 900 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2864 Lja-Chr6 57792372 57798595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2864 1 483 B3 DNA Binding Superfamily AT1G30330 86.503 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja6g2864 AUX_IAA 4.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2864 - - gmx:100798719 1503.42