Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2849 ATGTTTGAGACTGGCAGCAGTGGCCGTGACTCTGGTATGAGCTTGGAGACTTCCACACAGCGAACTTCAATGAGCAGCGGCAGCGACAGCGGTTGCAGCACCAGCTTCAGCCGTCTCTCTTTCGACCTCCTCCGCCCCTCCTCCCCACCAGAGAGCCTCTCCGTCAAACCTCACCGCTCCTCCGACTTCGCCTACTCCGCCATCCGCCGCAAAACCTCCCTCACCTTCCGTGACTTCCACCTCCTCCGCCGCATCGGCTCCGGCGACATCGGCACCGTCTACCTCTGCCGCCTCCGAGCCGCCGCGGAGGAAGATGACGACGACGACGAGCCTGCCTCCTGCTTCTACGCCATGAAAGTCGTCGACAAAGAAGCCGTCGCTCTCAAGAAGAAAGCGCAGAGAGCAGAAATGGAGAGGAAAATCCTCAAAATGCTTGACCACCCGTTCTTACCTTCACTCTACGCTGAGTTTGAAGCCTCTCATTTCTCTTGCATTGTCATGGAGTTTTGCTCCGGCGGTGACTTACACTCCCTCCGCCACCGCCTCCCTCACAATCGCTTCTCTCTCTCCTCCGCCAGGTTTTACGCGGCGGAAGTGCTGGTGGCATTGGAGTATCTACACATGCTAGGAATCATCTACAGAGACCTCAAGCCGGAGAACGTGTTGGTGAGATCAGACGGTCACATCATGCTCTCCGATTTCGATCTCTCACTCTGCTCCGACGCAACCCCCGCCGTTGAGTCCTCTGATTATTCATTCCCACCGGAGGAACCATCCTGCACCCGCCACAACTCTACCCCGTTCTTCTCCTGCCTCTCGAACCGCCTCTTCCGGTCCAGAAAAGTGCAGACGGTTCAACCAAACCGCCTCTTCGTGGCTGAACCGGTGGGAGCCCGGTCGTGCTCCTTCGTCGGGACTCACGAGTACGTCTCGCCGGAAGTTGCCTCCGGGAACTCCCACGGCAACGCCGTGGACTGGTGGTCGTTTGGGATATTCATCTACGAAATGGTGTACGGTCGCACACCCTTTGCGGGTCCATCAAATGACGTTACGCTGCGTAGCATCTTGAAAAAGCCTCTTGTCTTTCCTACCGCCACGCCCTCCAGCGCGCTTGAGATGCACGCGCGGGACCTTATTTCCGGGTTGTTAAACAAGGACCCGAACCGGAGGCTCGGGTCGATGCGTGGCGCTGCTGACGTCAAGAAGCACCCGTTCTTTGCCGGGATTAACCTGGCGTTGATACGGATGGTGGCGCCGCCGGAAGTTCCGTCGCTTAGAAGGCAAAAAACGACGCCGGTAGCCGGTAACAGGAATAACAGTAAGCAACAGGCTGCGGCGTCGTTTGATTACTTTTAA 1356 0.5752 MFETGSSGRDSGMSLETSTQRTSMSSGSDSGCSTSFSRLSFDLLRPSSPPESLSVKPHRSSDFAYSAIRRKTSLTFRDFHLLRRIGSGDIGTVYLCRLRAAAEEDDDDDEPASCFYAMKVVDKEAVALKKKAQRAEMERKILKMLDHPFLPSLYAEFEASHFSCIVMEFCSGGDLHSLRHRLPHNRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESSDYSFPPEEPSCTRHNSTPFFSCLSNRLFRSRKVQTVQPNRLFVAEPVGARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIYEMVYGRTPFAGPSNDVTLRSILKKPLVFPTATPSSALEMHARDLISGLLNKDPNRRLGSMRGAADVKKHPFFAGINLALIRMVAPPEVPSLRRQKTTPVAGNRNNSKQQAAASFDYF* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2849 451 Coils Coil 118 145 - -
Lja6g2849 451 Gene3D Transferase(Phosphotransferase) domain 1 299 424 - -
Lja6g2849 451 MobiDBLite consensus disorder prediction 1 32 - -
Lja6g2849 451 CDD STKc_phototropin_like 77 427 - -
Lja6g2849 451 SUPERFAMILY Protein kinase-like (PK-like) 53 426 IPR011009 -
Lja6g2849 451 MobiDBLite consensus disorder prediction 427 451 - -
Lja6g2849 451 PANTHER FLIPPASE KINASE 1-RELATED 2 450 - -
Lja6g2849 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Lja6g2849 451 MobiDBLite consensus disorder prediction 429 451 - -
Lja6g2849 451 Gene3D Transferase(Phosphotransferase) domain 1 170 238 - -
Lja6g2849 451 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 2 450 - -
Lja6g2849 451 SMART serkin_6 79 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2849 451 Pfam Protein kinase domain 79 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2849 451 Pfam Protein kinase domain 301 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2849 451 Gene3D Phosphorylase Kinase; domain 1 77 169 - -
Lja6g2849 451 ProSiteProfiles Protein kinase domain profile. 79 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2849 Lja-Chr6 57684972 57686599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2849 9 451 AGC Kinase Gene Family AT2G34650 67.188 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja6g2849 Pkinase 2e-32 CL0016