Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2848 ATGGCTTTCGGGCCATTGGATTGGTATTGTCGCCCTGTTGCGAATGGACTGTGGACAAGGACAGTTCAGAATGCCTTTGGTGCTTACACTCCTTGTGCAGTTGACTCTCTGGTGATCTCTGTTTCTCATTTGATTCTTCTTGGCCTATGCGTCTACCGTATATGGTTGATTAAGACGGATTTCAAAGCTAAGAGGTTATGTTTGAGGTCAAACCTCTACAATTATTTTCTGGGATTATTGGCTGCATACTGTGTGGCTGAGCCATTATACAGATTGATCATGGGGATATCAGTTCTGAATATTGATGGCCAGACTAGTCTTGCTCCATTTGAGATAGTTGCTCTGATTGTTGAGGCCCTTACTTGGTGCTCTATGTTGATTATGCTTTGGATTGAAACTAAAGTCTACATCAGTAAATTCCGATGGTTCGTCAGATTTGGATTGATTTATGCTATTGTAGGGGATGCTGTTATGGTCAATCTCGTCATTTTGGTGCAAGAGTTCTATAGCAGATCTGTGCTGTATTTGTACATCAGCGAGGTGGTCTGCCAGGTTTTGTTTGGAATACTTTTGCTTGTGTATGTTCCTACTTTGGATCCTTATCCAGGTTACACATCCATTGAGAGTGAAGTGGATACTGATGCTGAGTATGATGAACTCCCTGAAGGAGAGCTGATATTTCCTGAGAGGCAGGCCAACATATTTTCAAAAACACTTTTTTCTTGGATGAATCCCCTCATGCAACTTGGATACAAAAGACCGCTTACTGAAAGAGATATATGGAAATTAGATACGTGGGATACGACGGAGACACTGAACAATGGGTTCCAGAAATGTTGGGCTGAGGAGTCTCAGAAGTCGAAACCTTGGCTCTTAAGAGCATTAAATGCAAGCCTTGGAAGAAGGTTTTGGTTTGGAGGCCTTTGGAAGATTGGCAATGATGTTTCCCAATTTTCGGGCCCACTTATATTGAATCAGCTGCTACAGTCTATGCAAGAAGGTGGTCCGGCTGGGATTGGTTATATATATGCCTTCTCAATATTTCTTGGAGTGGTCTTTGGGGTTTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGTTACAGGCTAAGATCAACGCTGGTAGCTGCTGTATTTCGCAAGTCTCTAAGGCTTACTCATGAATCACGAAAGCAATTTGCATCTGGAAAAATAACCAACTTAATGACTACAGATTCTGAGGCACTTCAGCAAATATGCCAATCACTTCACACTTTATGGTCAGCTCCAGTTCGAATCGTTGTTGCTATGTTTCTTCTTTACCAAGAACTAGGTCCTGCTTCCCTTATTGGTGCTTTGATGCTAGTTCTTATGTTTCCACTACAGACTTTTGTTATCAGCAGAATGCAGAAGTTGTCTAAGGAAGGATTACAACGTACAGACAAGAGAATTGGTCTCATGAATGAAATTTTGGCTGCCATGGACACCGTAAAATGTTATGCATGGGAGAGTAGTTTCCAATCTAAAGTACTGAATGTCCGAAGTGATGAATTATCATGGTTTCGAAAAGCATCACTACTTGGAGCGTTAAATGGATTTATACTAAATAGCATTCCAGTTCTTGTAACTGTGGTTTCATTTGGAGTTTTCACGTTGCTTGGAGGGGATTTGACACCTGCAAGAGCTTTCACATCACTTTCTCTGTTTGCCGTGCTTCGATTCCCTCTCTTCATGCTTCCTAATACCATAACTCAGGTGGTTAATGCGAATGTGTCCTTGAAGCGTCTGGAGGATTTGCTTTTAGCAGAAGAGAGAATACTTCTACCAAATCCACCTCTTGAGCCAAGCTTACCAGCTATCTCGATCAAGAATGGATACTTTTCTTGGGATGCAAAGGAAGTGCGACCTACATTGTCAAACATAAATTTGGATATACCTGTTGGTAGCCTAGTTGCAGTTGTTGGTAGCACTGGAGAAGGGAAGACATCACTCATATCTGCGATGCTTGGAGAACTTCCTCCAATTGCAGACTCAACTGTTGTAATGAGAGGAACAGTTGCTTATGTACCCCAAATTTCGTGGATTTTTAATGCAACTGTACGGGATAATGTTTTATTTGGTTCTGGCTTTGACCCAAGAAGATATGAAAAGGCAATAGATGTGACTGAACTGCTTCATGACCTTGAGTTACTGCCTGGTGGTGATCTTACTGAAATTGGCGAAAGAGGGGTAAACATCAGTGGTGGCCAGAAGCAAAGAGTATCCATGGCTAGAGCTGTCTACTCCAATTCTGATGTGTTCATATTTGATGACCCCTTGAGTGCTCTCGATGCCCATGTGGCTAGACAGGTTTTTGATAAGTGCATCAAGGGAGAATTGAGAGGGAAGACCCGAGTTCTTGTTACAAACCAGCTACATTTCCTTTCTCAGGTTGACAGAATCGTTTTGGTCCATGATGGTATGGTGAAGGAGGAGGGAACTTTTGAGGAACTCTCAAACCAGGGACCATTGTTCCAAAAACTTATGGAAAATGCGGGTAAGATGGAGGAGTATGAAGAAGAAAAGGGAGATATTGAAACCACTGATCAGAAGTCCCCTTCAAAACCAGTGGTCAATGGCGAAGTTAATGATTCTACAAAGGGTGGGAGTAAACAAAAAGGAGGAAAATCTGTCCTTATCAAACAGGAAGAACGGGAAACAGGTGTTGTCAATTGGAACGTTCTAATGAGGTACAAAAATGCATTAGGAGGCTCTTGGGTGGTTCTTATACTCTTTGGATGCTATGTCTTAACAGAGGGGCTACGAGTATCAAGTAGCACGTGGTTAAGCCATTGGACTGATCAGAGTACTACTGAGGGTTATAATCCTGCCTTTTACAATCTGATATATGCGTCTCTATCATTTTGTCAGGTTTTGGTGACTCTAACAAATTCTTTCTGGCTAATCCTATCAAGTCTTTATGCTGCCAGAAGGTTGCATGAAGCCATGCTTAACTCTATATTACGAGCTCCGATGGTCTTCTTCCATACAAATCCACTCGGAAGGATCATCAACAGGTTTGCCAAGGATCTAGGCGATATCGATCGTAATGTTGCCCCGTTCATGAACATGTTTCTAGGTCAAGTTTTCATGCTTCTCTCAACATTCATCCTCATAGGTATTGTCAGCACAATGTCCTTGTGGGCGATAATGCCATTGCTGGTACTGTTTTATGGAGCATATCTATACTATCAGAGCACAGCTCGTGAAGTGAAGCGATTAGATTCAATTAGCAGATCTCCTGTTTATGCACAATTTGGAGAAGCTCTGAACGGTTTGTCAACAATTCGCGCTTACAAAGCATACGATCGAATGGCGGAGATAAATGGGAGATCCATGGACAACAACATCCGATTCACGTTGGTGAACATAAGCGCAAACCGATGGCTCGCGATCCGGTTGGAAACCCTAGGAGGCCTCATGATATGGTTCACTGCGTCCTTCGCAGTGATGCAGAACGGTAGGGCAGAGAACCAGCAAGAATTAGCATCCACCATGGGGTTGCTTCTCAGTTACGCTTTGAATATCACCAGCTTGCTCACTGGTGTGCTCAGGCTTGCAAGTTTGGCTGAGAATAGTTTGAATTCTGTGGAACGTATTGGAACATACATAGATTTGCCTTCAGAGGCTCCTTCTGTCATTGAGGATAATCGCCCTCCCCCTGCGTGGCCTTCTTCGGGTGCCATCAAATTCAATGATGTTGTTCTTCGCTACAGGCCTGAGCTTCCTCCTGTGTTGCATGGCATCAGTTTCACGATTTTCCCGAGCGATAAGGTTGGCATTGTTGGGAGGACTGGCGCGGGAAAATCCAGCATGCTCAATGCACTGTTTCGGATAGTGGAATTGGAAAGAGGGAGAATACTGATTGATGATTGTGATATTGCAAAGTTCGGGTTGGCTGATTTGCGTAAAGTTCTGGGCATTATACCACAATCTCCAGTTCTCTTTTCAGGAACTGTGAGATTTAATCTTGATCCATTTACTGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATTCGAAGAAATTCTTTGGGGCTGGATGCCGAGGTATCTGAGGCAGGCGAGAACTTCAGTGTTGGGCAGAGGCAACTGTTGAGTCTTGCCAGGGCTTTATTGCGGAGATCTAAGATATTAGTACTTGATGAGGCAACTGCAGCAGTTGATGTTAGAACAGATGCACTCATACAGAAAACAATCCGAGAGGAATTTAAATCCTGTACAATGCTCATTATTGCTCATCGCCTTAACACCATTATTGATTGTGATCGGATTATTTTGCTTGATGGTGGCAAGGTTCTCGAGTATGATACCCCTGAGGTGCTGCTGTCAAATGAAGGTAGTGCTTTCTCTAAGATGGTGCAGAGTACAGGAGCTGCAAATGCCCAATACTTGCGCAGCTTAGCACTTGGCGGGGACAAATCAGAAAGAGCAGAGAACACGCGTCTCGATGGTCAGAGAAAATGGATGGCTTCTTCCCGGTGGGCTGCTGCAGCCCAGTTTGCTCTTGCTGTTAGTCTCACGTCATCGCAGAATGACCTACAACGGTTGGAAGTAGAAGATGACAACAGTATTCTCAAGAAGACAAAGGATGCTCTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGGAATCTTTAGAACAGCGACAAGTGTCCCCAGAAGGATGGTGGTCATCGCTTTACAAGATGATTGAAGGTCTTGCTATGATGAGTAGATTGGGCAGGAACAGGCTCCATGAACCAGACTACGGTTTTGAGAACCAATCAATCAACTTTGATCAAGTTGATATGTAG 4860 0.4342 MAFGPLDWYCRPVANGLWTRTVQNAFGAYTPCAVDSLVISVSHLILLGLCVYRIWLIKTDFKAKRLCLRSNLYNYFLGLLAAYCVAEPLYRLIMGISVLNIDGQTSLAPFEIVALIVEALTWCSMLIMLWIETKVYISKFRWFVRFGLIYAIVGDAVMVNLVILVQEFYSRSVLYLYISEVVCQVLFGILLLVYVPTLDPYPGYTSIESEVDTDAEYDELPEGELIFPERQANIFSKTLFSWMNPLMQLGYKRPLTERDIWKLDTWDTTETLNNGFQKCWAEESQKSKPWLLRALNASLGRRFWFGGLWKIGNDVSQFSGPLILNQLLQSMQEGGPAGIGYIYAFSIFLGVVFGVLCEAQYFQNVMRVGYRLRSTLVAAVFRKSLRLTHESRKQFASGKITNLMTTDSEALQQICQSLHTLWSAPVRIVVAMFLLYQELGPASLIGALMLVLMFPLQTFVISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWESSFQSKVLNVRSDELSWFRKASLLGALNGFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEERILLPNPPLEPSLPAISIKNGYFSWDAKEVRPTLSNINLDIPVGSLVAVVGSTGEGKTSLISAMLGELPPIADSTVVMRGTVAYVPQISWIFNATVRDNVLFGSGFDPRRYEKAIDVTELLHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIVLVHDGMVKEEGTFEELSNQGPLFQKLMENAGKMEEYEEEKGDIETTDQKSPSKPVVNGEVNDSTKGGSKQKGGKSVLIKQEERETGVVNWNVLMRYKNALGGSWVVLILFGCYVLTEGLRVSSSTWLSHWTDQSTTEGYNPAFYNLIYASLSFCQVLVTLTNSFWLILSSLYAARRLHEAMLNSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAPFMNMFLGQVFMLLSTFILIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNISANRWLAIRLETLGGLMIWFTASFAVMQNGRAENQQELASTMGLLLSYALNITSLLTGVLRLASLAENSLNSVERIGTYIDLPSEAPSVIEDNRPPPAWPSSGAIKFNDVVLRYRPELPPVLHGISFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFTEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIILLDGGKVLEYDTPEVLLSNEGSAFSKMVQSTGAANAQYLRSLALGGDKSERAENTRLDGQRKWMASSRWAAAAQFALAVSLTSSQNDLQRLEVEDDNSILKKTKDALITLQGVLERKHDKEIEESLEQRQVSPEGWWSSLYKMIEGLAMMSRLGRNRLHEPDYGFENQSINFDQVDM* 1620
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2848 1619 MobiDBLite consensus disorder prediction 844 887 - -
Lja6g2848 1619 MobiDBLite consensus disorder prediction 858 880 - -
Lja6g2848 1619 CDD ABC_6TM_ABCC_D2 916 1212 IPR044726 GO:0140359
Lja6g2848 1619 CDD ABCC_MRP_domain1 615 815 - -
Lja6g2848 1619 SUPERFAMILY ABC transporter transmembrane region 914 1217 IPR036640 GO:0005524|GO:0016021
Lja6g2848 1619 CDD ABCC_MRP_domain2 1235 1455 - -
Lja6g2848 1619 Gene3D ABC transporter type 1, transmembrane domain 879 1218 IPR036640 GO:0005524|GO:0016021
Lja6g2848 1619 Gene3D ABC transporter type 1, transmembrane domain 277 601 IPR036640 GO:0005524|GO:0016021
Lja6g2848 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
Lja6g2848 1619 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Lja6g2848 1619 SUPERFAMILY ABC transporter transmembrane region 289 595 IPR036640 GO:0005524|GO:0016021
Lja6g2848 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 838 IPR027417 -
Lja6g2848 1619 Gene3D - 609 863 IPR027417 -
Lja6g2848 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1468 IPR027417 -
Lja6g2848 1619 Pfam ABC transporter transmembrane region 305 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2848 1619 Pfam ABC transporter transmembrane region 916 1161 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2848 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Lja6g2848 1619 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Lja6g2848 1619 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Lja6g2848 1619 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 36 1514 - -
Lja6g2848 1619 SMART AAA_5 1263 1456 IPR003593 -
Lja6g2848 1619 SMART AAA_5 642 817 IPR003593 -
Lja6g2848 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1200 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2848 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2848 1619 Gene3D - 1220 1473 IPR027417 -
Lja6g2848 1619 ProSitePatterns ABC transporters family signature. 1374 1388 IPR017871 GO:0005524
Lja6g2848 1619 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Lja6g2848 1619 PANTHER ABC TRANSPORTER C FAMILY MEMBER 1 36 1514 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja6g2848 Lja-Chr6 57659644 57674307 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2848 615 864 Calmodulin-binding Proteins AT2G36910 27.925 2.37e-25 112