Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2847 ATGGAGGAGGATGAGATTCAAGAACAGGTTTCTAAGTTCCCAAGAATTGAAAATGGCACCACTTTCCAAAGTAGCAGCTGGCACAACAACTCTTCAAGAATAGTGAGGGTGTCTAGAGCCTCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACTTCTAAGGGGTTAAGGGATAGAAGAGTTAGGCTCTCAGTGTCCACAGCTATTCAGTTCTATGACCTTCAAGATCGCTTGGGTGTTGACCAGCCAAGCAAAGCTGTGGACTGGTTAATCAAAGCTGCTGAAGATGCTATCTCAGAGCTCCCTTCTCTCAACAACCTTTTCCCTGAAACCCCACAGCAACAAAGTGATCATGAGAATCAGAACCTGAACCAGAATCTTAACTCCTTGTCCAAATCTGCTTGCAGCAGCAATTCTGAGACAAGCAAAGGCTCTGGTGGCTTGTCCCTCTCGCGGTGTGAGAATCGCGTCAAGGCGAGGGAGAGGGCAAGGGAAAGAGCAGCAAAGGAGAAAGAGAATGAGTCAAGCATTGCACACAATGTAAACAACAACCACCACCACATGTCTCAAACTGCTTCTTTCACTGAGCTACTCACTGGTGGAATTGGAAGCACAGTGACAGTTCCCACCACCACAGCTAGTCCCACTGGGTCAGTTCATCAAACACATGGTGGCCATCATCAATGGTCTTCAACTGTAACTCCAATGGACTACTTCAGCTCTGGCCTTCTGATGGGACATTCATCTTCAAGAACTCATCAATCTTCTTCCTCTTCTTCTTCATCTCCTGGATTCTCAGGGCAAATCCAATTAGGACATTCACTTCCGGTTTCACCGTTCAGCGGCGAAAACCACTCAGATCAGATGCAGCGTTTCTCCTTCATGCCTGAACATCTGATGGTTACTTCATCTTCTTGTTCTACTCAGCCTAGCGGGATCAGTGACTACAATCTCAACTTCACCATATCTCCTGGCCTTGCTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCACCGTCTCTTTTGCCTCATCATCACCATCTGCAGAGGTTTTCTTCTTCACAAGTAGACGGTTCATCATCCAATAACAATCTACCTTTCTTCATGGGAGGAGCTGCTGCTGCTCCTTCAACCATGGAAAACCATCACCACCTTCAATTCTCACCTCTCTTCGATGGCCGCTTGCAACTTTGCTACGGCGACGGAAGCAGAAACTCAGACCAGAAGGGGAAAGGCAAGAACTGA 1248 0.4752 MEEDEIQEQVSKFPRIENGTTFQSSSWHNNSSRIVRVSRASGGKDRHSKVMTSKGLRDRRVRLSVSTAIQFYDLQDRLGVDQPSKAVDWLIKAAEDAISELPSLNNLFPETPQQQSDHENQNLNQNLNSLSKSACSSNSETSKGSGGLSLSRCENRVKARERARERAAKEKENESSIAHNVNNNHHHMSQTASFTELLTGGIGSTVTVPTTTASPTGSVHQTHGGHHQWSSTVTPMDYFSSGLLMGHSSSRTHQSSSSSSSSPGFSGQIQLGHSLPVSPFSGENHSDQMQRFSFMPEHLMVTSSSCSTQPSGISDYNLNFTISPGLAAGYNRGTLQSNSPSLLPHHHHLQRFSSSQVDGSSSNNNLPFFMGGAAAAPSTMENHHHLQFSPLFDGRLQLCYGDGSRNSDQKGKGKN* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2847 415 ProSiteProfiles R domain profile. 153 171 IPR017888 -
Lja6g2847 415 MobiDBLite consensus disorder prediction 129 149 - -
Lja6g2847 415 Pfam TCP family transcription factor 42 173 IPR017887 -
Lja6g2847 415 MobiDBLite consensus disorder prediction 154 176 - -
Lja6g2847 415 Coils Coil 150 170 - -
Lja6g2847 415 MobiDBLite consensus disorder prediction 129 179 - -
Lja6g2847 415 ProSiteProfiles TCP domain profile. 43 101 IPR017887 -
Lja6g2847 415 MobiDBLite consensus disorder prediction 244 286 - -
Lja6g2847 415 PANTHER TRANSCRIPTION FACTOR TCP24 14 415 - -
Lja6g2847 415 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 415 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2847 Lja-Chr6 57645662 57652949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2847 25 415 TCP Transcription Factor Family AT4G18390 47.942 5.00e-89 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja6g2847 TCP 7.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2847 - - gmx:100787772 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2847 6 57645662 57652949 Lja6g2847 6 57645662 57652949 ECH