Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2841 ATGAGGAGGAATTGCAACTTGGAACTTCGCCTTTTTCCTTCTTCCTACGATTCCAGCCACCACCACGATAACCACCCCATGGTAGAAGAAAGTAGTAAGAGTCCAATGCAAAATTACTTCCAGCAGCAGGAAAACCAACGGCCGCTGACCATTTTCTATGAAGGGAAGATTTGTGTTGCAGATGTCACAGAGCATCAGGCCAAATCCATCTTGATGCTAGCACATAAAAAAGTGGAGGAGGAAATTAGAATGAGAACACCAACGGGGGCAGAACCATCTACACCAACAATAGTGCAATCTCCTCATCATGTGCATAGCCCTGGCACTGGTCTTTCCATGAAAAGATCATTGCAGCAGTTCCTCCAGAAGAGAAAAACTAGAGTCCAAGAAGCTTCACCATACCATCGCTAG 411 0.455 MRRNCNLELRLFPSSYDSSHHHDNHPMVEESSKSPMQNYFQQQENQRPLTIFYEGKICVADVTEHQAKSILMLAHKKVEEEIRMRTPTGAEPSTPTIVQSPHHVHSPGTGLSMKRSLQQFLQKRKTRVQEASPYHR* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2841 136 ProSiteProfiles Tify domain profile. 42 76 IPR010399 -
Lja6g2841 136 MobiDBLite consensus disorder prediction 86 113 - -
Lja6g2841 136 MobiDBLite consensus disorder prediction 89 113 - -
Lja6g2841 136 PANTHER - 1 134 - -
Lja6g2841 136 SMART tify_2 42 76 IPR010399 -
Lja6g2841 136 Pfam Jas motif 114 134 IPR018467 -
Lja6g2841 136 Pfam tify domain 44 74 IPR010399 -
Lja6g2841 136 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 134 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2841 Lja-Chr6 57595730 57598128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2841 1 135 Tify Gene Family AT1G30135 44.118 1.57e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lja6g2841 tify 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2841 - - gmx:100500349 174.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2841 6 57595730 57598128 Lja6g2841 6 57595730 57598128 ECH