Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2818 ATGGTTACCTTCAGGTTCCATCAGTACCAGGTTGTCGGGAGGGCTCTCCCCACTGATTCCGACCAGCACCCCAAGATTTACCGCATGAAGCTCTGGGCCACCAATGAGGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAGGAAATTGAAGAAGGTTAAGAAGAGCAATGGTCAAGTCCTTGCTATCAATGAGATTTTTGAGAAGAACCCAACCAAGATTAAGAACTTTGGGATATGGTTGAGGTATCAGAGTAGGACTGGCTACCACAACATGTACAAGGAGTACCGTGATACCACTCTAAATGGTGCAGTTGATGCAATGTACACTGAGATGGCTTCTCGCCACAGGGTCCGATCCCCTTGCATTCAGATTATTAAGACTGCAACTGTTCCTGCTAAACTGTGCAAAAGGGAAAGCACCAAACAATTCCACAATTCAAAGATCAAGTTCCCATTGGTTTACAGGAAGGTCAGACCACCATCAAGGAAGTTGAAGACCACCTACAAGGCAAAGAAGCCCAACTTGTTCATGTAA 537 0.46 MVTFRFHQYQVVGRALPTDSDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVDAMYTEMASRHRVRSPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYRKVRPPSRKLKTTYKAKKPNLFM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2818 178 Gene3D - 1 71 - -
Lja6g2818 178 Gene3D - 72 147 - -
Lja6g2818 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Lja6g2818 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 - -
Lja6g2818 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 - -
Lja6g2818 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 IPR028877 -
Lja6g2818 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 IPR028877 -
Lja6g2818 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lja6g2818 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Lja6g2818 178 SUPERFAMILY RplX-like 71 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2818 Lja-Chr6 57302120 57304464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2818 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 92.135 1.83e-123 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2818 K02882 - gmx:100306174 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2818 6 57302120 57304464 Lja6g2818 6 57302120 57304464 ECH