Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2817 ATGGAGCAGTACGGCCGCTCCAACGAGGGCTCGCGGTCTGATCCGTCGCCGGAATGGACCGGACCCGGCGGCGAAACTGGCCTTGAAGAACCTATGTGGCAATTGGGGCTGGGTGGTGCTGCTTCCGACGAATCGTATCCGCAGCGTCCCGATGAGGCTGATTGCTCCTACTATTTGAGAACCGGTTTCTGCGGCTTTGGTTCCCGGTGTCGGTTCAATCATCCCCGTGACCGTGGCGCGGTTATTGGAGCTGCCAGAACTGCCGGGGACTATCCAGAACGAGCAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAGGATCGTGCAAATTCGGTGCGTCTTGCAAGTATCATCACCCTAGGCAGGCAGGAGGCATGGCTAGTCCGGTGTCACTAAATTATTATGGATATCCAATACGACCGGGTGAGAAAGAGTGCTCCTATTATGTGAAAACGGGACAATGTAAGTTCAGTGCAACTTGTAAATTCCATCATCCACTTCCCACTGGTGTTCAAATTCAAGCACCACCGCCAGTTCCCCCGGTTTCACCTTTACCTGTACCAGTACCTTCACCCTTGTATCAAAACGTACAGTCTCCATCTGGTCCTTCATCTCAACAAATCGGTGTACTGGTTGCAAGGCCACCTTTATTACCTGGTTCGTTTGTTCACAGCCCCTACGGACCTGTGGTAGTCTCCCCTACTATGGTTCCTTTTTCTGGTTGGGGACCATATCAAGCTTCTGCAACAAGCCCAGTACTTCCTTCCAGCTCTCCATCTAATGTTGGTTCAACACAGCTTTATGGGATAACTCACCTACCTTCATCTGCTGCTGCCTATACTGGACCATATCAACCTTCTGGTTTCTCAGTTGGTCCTTCAAGCAGTAGTCAGAAGCAGTCATTTTCAGAAAGGCCATATCCACCAGAAATTCAGTACTATTCGAAAATAGGGGAGTCAAAATTGGGTCCATCATATAGGTATCAACATCAAGCAGACATGAATGCTGCGCCGAAAGTGAATGTCATTCTTAGTCCTGCAGGCCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATGCACAGCGGGGAGTATGTAAGTTTGGTCCTGCATGCAAGTTTGATCATCCTATGTCTTCAATGAGTTACAGTCCATCTGCTTCTTCCCTGACTGACATGCCAGTTGCGCCCTATCCTGTGGGTTCATCAATTGGTACTCTTGCTCCACCATCTTCATCATCAGAATTGCAGCCCGGACTTACCACAGGATCCAACAAGGAGTCTGTTCCATCCAGAATATCTTCATCAATGAACACATCGACCGGATCTGTTGGCTTGACTTTGTCTACCGGTGAACCTGTTTCTCAATCAAGCACTCAACCATCTGCTCAGAGTTCCATTCCTTTAGCAGCAGTCAATTCCACCACAAGTAGCAATGTTTCTCACACTTCAAGCTAA 1461 0.4949 MEQYGRSNEGSRSDPSPEWTGPGGETGLEEPMWQLGLGGAASDESYPQRPDEADCSYYLRTGFCGFGSRCRFNHPRDRGAVIGAARTAGDYPERAGQPVCQYYMRTGSCKFGASCKYHHPRQAGGMASPVSLNYYGYPIRPGEKECSYYVKTGQCKFSATCKFHHPLPTGVQIQAPPPVPPVSPLPVPVPSPLYQNVQSPSGPSSQQIGVLVARPPLLPGSFVHSPYGPVVVSPTMVPFSGWGPYQASATSPVLPSSSPSNVGSTQLYGITHLPSSAAAYTGPYQPSGFSVGPSSSSQKQSFSERPYPPEIQYYSKIGESKLGPSYRYQHQADMNAAPKVNVILSPAGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPMSSMSYSPSASSLTDMPVAPYPVGSSIGTLAPPSSSSELQPGLTTGSNKESVPSRISSSMNTSTGSVGLTLSTGEPVSQSSTQPSAQSSIPLAAVNSTTSSNVSHTSS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2817 486 Gene3D - 129 175 - -
Lja6g2817 486 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Lja6g2817 486 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Lja6g2817 486 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Lja6g2817 486 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Lja6g2817 486 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Lja6g2817 486 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Lja6g2817 486 MobiDBLite consensus disorder prediction 1 15 - -
Lja6g2817 486 MobiDBLite consensus disorder prediction 1 47 - -
Lja6g2817 486 MobiDBLite consensus disorder prediction 407 486 - -
Lja6g2817 486 SUPERFAMILY CCCH zinc finger 356 382 IPR036855 GO:0046872
Lja6g2817 486 SUPERFAMILY CCCH zinc finger 51 77 IPR036855 GO:0046872
Lja6g2817 486 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Lja6g2817 486 SUPERFAMILY CCCH zinc finger 97 122 IPR036855 GO:0046872
Lja6g2817 486 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Lja6g2817 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Lja6g2817 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 76 IPR000571 GO:0046872
Lja6g2817 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Lja6g2817 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 379 IPR000571 GO:0046872
Lja6g2817 486 PANTHER PROTEIN PHOSPHATASE RELATED 1 476 - -
Lja6g2817 486 SUPERFAMILY CCCH zinc finger 142 168 IPR036855 GO:0046872
Lja6g2817 486 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 476 - -
Lja6g2817 486 Gene3D - 47 128 - -
Lja6g2817 486 Gene3D - 310 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2817 Lja-Chr6 57273802 57279005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2817 1 436 C2H2 Transcription Factor Family AT5G18550 56.236 1.96e-147 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja6g2817 zf-CCCH 3.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2817 - - gmx:100812433 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1255 4 11067946 11073031 Lja6g2817 6 57273802 57279005 PCT