Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2816 ATGTCTACCTCTAGAAACTCAGAATCTTTCCTCAAAGGATATGACCCTAATCAAACCCAAATAAACTTATCTCTCCTTCAAAGAAACACATCTCCTTGCAGTGAGAGAAGAGGCAGAAAAAAGCAAGCAGATCCAGGGAGGTTTCTTGGGGTGAGGCGCCGCCCTTGGGGTCGATATGCTGCTGAAATCAGAGACCCTGCAACTAAAGAAAGACACTGGCTTGGAACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGTAGCCAAGCAAGAACCAATTTCATATACTCTGATGACACCAATCTTCACAATGTTCTCAGTCCAATGAATGTTCAAGCTCTCTTACCAGCTTCTCAGTTCCACAATAACACTCAGAGCACACAACCAACCAATCAGAATAGCCTCTCTCACATTAATACTTCCAACATTGGAAGCTCCTCTGGCTTGAATGCTGAAAGTGCATATGGGTCACCCCATGATGACAATTTCTTCTTCTCCAATGATTCTTCTAACTCAGGCTATTTGGAATGCATAGTTCCTGATAACTGTTTCAGACCTGCTTCAAGTGATCAAAAAGCTGGTAGCAGCATTAACACAAACACCATGCAGGCTCAATCACATTTTGACAACATTGCATTCTCTCAAGAAGCCTCAAACATGAATTTTCCATCTTACCCAAGTGAACTTGGTCAAGGATTATGGGGTAATCAACAATCATGGGATTTCAATTCTTCTAATGAACTTAATTCAGCCATGTTTCACAATCCATTAAGGAATGAAGAAGGGTGCATGTATGCATTTTGTCCCATCAGTGACAGTCCAAACTATGGGCCAATGACTGAGGCTGTTTCTTCAACTACAACATCATTTCCTCTCTTTGGGGATGTTGACTTTGAATACTCACTCTTCTAA 939 0.4185 MSTSRNSESFLKGYDPNQTQINLSLLQRNTSPCSERRGRKKQADPGRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFIYSDDTNLHNVLSPMNVQALLPASQFHNNTQSTQPTNQNSLSHINTSNIGSSSGLNAESAYGSPHDDNFFFSNDSSNSGYLECIVPDNCFRPASSDQKAGSSINTNTMQAQSHFDNIAFSQEASNMNFPSYPSELGQGLWGNQQSWDFNSSNELNSAMFHNPLRNEEGCMYAFCPISDSPNYGPMTEAVSSTTTSFPLFGDVDFEYSLF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2816 312 MobiDBLite consensus disorder prediction 130 152 - -
Lja6g2816 312 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 312 - -
Lja6g2816 312 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Lja6g2816 312 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Lja6g2816 312 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Lja6g2816 312 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Lja6g2816 312 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 312 - -
Lja6g2816 312 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Lja6g2816 312 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Lja6g2816 312 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Lja6g2816 312 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2816 Lja-Chr6 57270670 57271608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2816 1 208 AP2-EREBP Transcription Factor Family AT5G18560 42.642 5.22e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja6g2816 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2816 - - gmx:100812047 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1254 4 11062453 11063424 Lja6g2816 6 57270670 57271608 PCT