Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2814 ATGTTTGGTCTACTCAATCGCAGAGCATTGCTCTGCTCAAACCTCAAAACCACCATCACCAGAACCCCCTCATTTCTTCAACACTTTTCCTCCTCAGAACAACACTCTTTCACCACCAACTACCTCATCAACAACCTCGCCTTCTCCCCTGAAACCGCTTCCAAGAAACCTGACTCAGTCCTCGCCTTGTTCAGAACCCACGGCTTCACAAACCACCAGTTATCTCAGATCATCCGAACCCGCCCACTGTTCCTCTCCTCCGATCCCAACACCGCCATTCTTCCCAAATTCAACTTCCTTCTCTCGAAGGGTGCTTCAACTTCTGATCTAGTGGAAATCATCACCAAGGATCCCTGGCTCATGCACTACAGCTTGGAGAATGCCATCACCCCATGTTATGATTTCCTCAAAAGGTACTTGGTTTCTGATGAATCCACCATAGAGGCTATAAAATCATGCACTGGTTTGATTTATTCTAAGCACCCAGAAAAAAATATTCAAACTCTGCTTGAGAATGGTGTCCCTGAATCACAGGTTCCGATTCTGCTGTGTCGTTCGGGTTATTTATTGAAAAGACATGACCCTTCTGACTTTAAGAAGGCAGTGGAGGAAGTAAAAGAAATGGGGTTTGACCCCAACAAGAAGTTTTTCATAGTTGCATTGAATGCTAAGACTATGAAAGTTTCACTGTGGGAGAGGAAGATTGATTTGTATAAGAAATGGGGTTGGTCTGAAGAAATTGTTGTTTCAGTATTTAAGAGATATCCATGGTGCATGCTGGCATCTGAGAAGAAAATTGAGACTGTCATGGAGTTTTGGGTCAACCAAATGGGTTGGGACTCTCTGGTGCTCGCCAAACACCCGGTGCTTCTTTGGATTAGCTTGGAGAAAATAATTATTCCTAGGGCTTTTCTCTTGCAGTCTCTTCAATCCAGAGGTTTGATTAAGGATGCTAAATCGCCCGCAGCGTTTAAAGTTCCTGAGAAGATGTTCTTGCAGAAATTTGTGAATTGTTTTGAGGAAGAATCTGCTCAGCTCTTGGAGCTGTATAAAGAGAAAAAAAGGAGCTGTATGAAGAGACAAAATATCGTCCAAGATGACACAGTTGCAAATGCGACTGCCTATTTTATTGGTTTTCTGTACTCTCTGTCTGTGGTTGCTTAG 1164 0.4338 MFGLLNRRALLCSNLKTTITRTPSFLQHFSSSEQHSFTTNYLINNLAFSPETASKKPDSVLALFRTHGFTNHQLSQIIRTRPLFLSSDPNTAILPKFNFLLSKGASTSDLVEIITKDPWLMHYSLENAITPCYDFLKRYLVSDESTIEAIKSCTGLIYSKHPEKNIQTLLENGVPESQVPILLCRSGYLLKRHDPSDFKKAVEEVKEMGFDPNKKFFIVALNAKTMKVSLWERKIDLYKKWGWSEEIVVSVFKRYPWCMLASEKKIETVMEFWVNQMGWDSLVLAKHPVLLWISLEKIIIPRAFLLQSLQSRGLIKDAKSPAAFKVPEKMFLQKFVNCFEEESAQLLELYKEKKRSCMKRQNIVQDDTVANATAYFIGFLYSLSVVA* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2814 387 PANTHER CGI-12 PROTEIN-RELATED 26 356 IPR003690 GO:0003690|GO:0006355
Lja6g2814 387 Pfam mTERF 61 268 IPR003690 GO:0003690|GO:0006355
Lja6g2814 387 Pfam mTERF 233 329 IPR003690 GO:0003690|GO:0006355
Lja6g2814 387 SMART mt_12 75 106 IPR003690 GO:0003690|GO:0006355
Lja6g2814 387 SMART mt_12 180 211 IPR003690 GO:0003690|GO:0006355
Lja6g2814 387 SMART mt_12 111 142 IPR003690 GO:0003690|GO:0006355
Lja6g2814 387 SMART mt_12 249 280 IPR003690 GO:0003690|GO:0006355
Lja6g2814 387 SMART mt_12 281 312 IPR003690 GO:0003690|GO:0006355
Lja6g2814 387 Gene3D Transcription termination factor 3, mitochondrial 121 348 IPR038538 -
Lja6g2814 387 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 26 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2814 Lja-Chr6 57248191 57249666 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja6g2814 mTERF 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2814 K15032 - gmx:102663105 373.629