Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2812 ATGTTTGGTGTTTTCCATCGCAGAGCAATGCTCTGCTCCAACCTCAACATCACCATCATCAGAACTCCCTCATTTCTTCAACACTTTTCCACTTCTGAACAACACTCTTTCACCACCAACTACCTCATCAACAACTTCTCCTTCTCCCCTGAAACCGCTTCCAACCTCTCCACCCGAGTTCGTCTCGACAACTCAGACAGACCCGACTCTGTCCTCGCCTTGTTCAGAACCCATGGCTTCTCAAACCCTCAGTTATCTCAGATCATCCAAAGCTACCCAAAGCTTCTTTCCTCCGACCCCATCAAATCCATTCTTCCAAAGTTCAACTTCCTTCTCTCAAAGGGTGCTTCAACTTCCGACCTTGTGCAGATTGTGACCAAGAATCCCAGTGTCTTGAAGCAGAGCTTAGCAAATACCATCACCCCATGTTATGATTTCCTCAAAAGATTCTTGGTTTCTGATGAGTCCACTATATACTCTATAAAATACTGTCCTTGCTTGATTTATTCTAAGCTTCCATCCATTAATGTTCAAATGCTGCTTGAGAATGGTGTCCCTGAATCAAAAGTTGCTCTTATACTTCGTCGTTGGGGTCATATCGTCAGTGAGCATCATCCTATCATTAAGAAGGCAGTGGAAGAAGTAAAGAGATTAGGATTCAACCCCGCCTCGACATTTTTCATTGTAGCAGTGATTGCTAAGATGATGAACGATTCCCTGTGGCAAAGGAAGACTGATTTGTATAAGAAATGGGGCTGGTCTGAAGAAGTTATTGTTTCAGCATTTGTGAGACATCCATGGTGCATGCAGGCATCTGAGAAGAAAATTGAGTCTGTGATCGAGTTTTGGGTCAACCACATGGGTTGGGACTCTCTGGTGCTTGCCAAGCAACCGATACTTCTTACGTTGAGCTTGGAGAAAAGAGTTATTCCCAGGGCTTTTGTCTTGCAATTTCTTCAAAGTAGAGGTTTGATTAAGGATGCTAAATCGCCTACAGCGTTTAAACTTACTGATGATATGTTCTTGCAGAAATTTGTGAATTGTTTTGAGGATGAAGCTTCTCAGCTGTTGAAGCTGGGGCAAGTGTTACGAAATAAAATTGTAGGCTCGTGTATTTTGGTCTAA 1125 0.4302 MFGVFHRRAMLCSNLNITIIRTPSFLQHFSTSEQHSFTTNYLINNFSFSPETASNLSTRVRLDNSDRPDSVLALFRTHGFSNPQLSQIIQSYPKLLSSDPIKSILPKFNFLLSKGASTSDLVQIVTKNPSVLKQSLANTITPCYDFLKRFLVSDESTIYSIKYCPCLIYSKLPSINVQMLLENGVPESKVALILRRWGHIVSEHHPIIKKAVEEVKRLGFNPASTFFIVAVIAKMMNDSLWQRKTDLYKKWGWSEEVIVSAFVRHPWCMQASEKKIESVIEFWVNHMGWDSLVLAKQPILLTLSLEKRVIPRAFVLQFLQSRGLIKDAKSPTAFKLTDDMFLQKFVNCFEDEASQLLKLGQVLRNKIVGSCILV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2812 374 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 360 - -
Lja6g2812 374 PANTHER CGI-12 PROTEIN-RELATED 28 360 IPR003690 GO:0003690|GO:0006355
Lja6g2812 374 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Lja6g2812 374 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Lja6g2812 374 SMART mt_12 291 325 IPR003690 GO:0003690|GO:0006355
Lja6g2812 374 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Lja6g2812 374 SMART mt_12 191 221 IPR003690 GO:0003690|GO:0006355
Lja6g2812 374 Pfam mTERF 72 164 IPR003690 GO:0003690|GO:0006355
Lja6g2812 374 Pfam mTERF 176 341 IPR003690 GO:0003690|GO:0006355
Lja6g2812 374 Gene3D Transcription termination factor 3, mitochondrial 138 359 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2812 Lja-Chr6 57229131 57245854 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja6g2812 mTERF 8.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2812 K15032 - gmx:102663105 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2812 6 57229131 57245854 Lja6g2812 6 57229131 57245854 ECH