Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2811 ATGTTTGGTGTTTTCCATCGCAGAGCAATGCTCTGCTCCAACCTCAACATCACCATCATCAGAACTCCCTCATTTCTTCAACACTTTTCCTCCTCCAAACAACACTCTTTCACCACCAACTACCTCATCAACAACCTCACCTTCTCCCCTGAAACCGCTTCCAAACTCTCCACCCGAGTTCGTCTCAAAAACTCAGACCAACCCAACTCAGTCCTCGCCTTGTTCAGAACACACGGCTTCTCAAACACCCAGTTATCTAAAATCATCCAAACCTTTCCAAAGCTTCTTTCCTTCAATCCCAACAAGACCGTTCTTCCCAAGTTCAACTTCCTTCTCTCAAAGGGTGCTTCAACTTCTGACCTTGTGCAGATTGTGACCAAGAATCCCAGTGTCTTGAAGCAGGGCTTAGCAAATACCATCACCCCATGTTATGATTTCCTCAAAAGATTCTTGGTTTCTGATGAGTCCACTATATACTCTATAAAATACTGTCCTTGCTTGATTTATTCTAAGCTCCCATCCATTAATGTTCAACTTCTGCTTCAGAATGGTGTCCCTGAATCAAGGATTGCTTTCTTACTCCGTAGTTATTTCTATTCAGCTTGTAAGCAACCTGATGTCTTTAAAAAGGTAGTGGAAGAAGTAAAGGGTTTGGGATTCAACCCGAAATCGACACATTTCATTGTAGCAGTGACTACTAAGTTGATGGGAAGTTCCTTGTGGGAAAGGAAGGTTGATTTGTATAAGAAATGGGGTTGGTCTGAAGAAGTTATTGGTTCAGCATTTTTGAGAAATCCATGCTGTATGTGGACATCTATGGATAAAATTGAGGCTGTGATGGAGTTTTGGGTCAACGGCATCGGTTGGGACTCTTTGATGCTTGCTAAGTACCCGGTGCTTTTTACGTCGAGCTTGGAGAAAAAAATTATTCCCAGGGCTTTTGTGTTGCAATTTCTTCAATCCAGAGGTTTGATTAAGGATGTTAAATCGGCCCCGTTTAAACTTACTGATGATATGTTCTTGCAGAAATTTGTGAATTGTTTTGAGGAGGAAGCTTCTCATCTGTTGAAGCTGTATGAAGAGAAAATGTATCAACCAAGACATGAAAATGCATCTTTGTCCTATTTTGGGTTTGAAGACCTGAATAAATAG 1152 0.4132 MFGVFHRRAMLCSNLNITIIRTPSFLQHFSSSKQHSFTTNYLINNLTFSPETASKLSTRVRLKNSDQPNSVLALFRTHGFSNTQLSKIIQTFPKLLSFNPNKTVLPKFNFLLSKGASTSDLVQIVTKNPSVLKQGLANTITPCYDFLKRFLVSDESTIYSIKYCPCLIYSKLPSINVQLLLQNGVPESRIAFLLRSYFYSACKQPDVFKKVVEEVKGLGFNPKSTHFIVAVTTKLMGSSLWERKVDLYKKWGWSEEVIGSAFLRNPCCMWTSMDKIEAVMEFWVNGIGWDSLMLAKYPVLFTSSLEKKIIPRAFVLQFLQSRGLIKDVKSAPFKLTDDMFLQKFVNCFEEEASHLLKLYEEKMYQPRHENASLSYFGFEDLNK* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2811 383 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Lja6g2811 383 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Lja6g2811 383 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Lja6g2811 383 SMART mt_12 291 325 IPR003690 GO:0003690|GO:0006355
Lja6g2811 383 Gene3D Transcription termination factor 3, mitochondrial 138 358 IPR038538 -
Lja6g2811 383 Pfam mTERF 72 228 IPR003690 GO:0003690|GO:0006355
Lja6g2811 383 Pfam mTERF 243 328 IPR003690 GO:0003690|GO:0006355
Lja6g2811 383 PANTHER CGI-12 PROTEIN-RELATED 28 368 IPR003690 GO:0003690|GO:0006355
Lja6g2811 383 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2811 Lja-Chr6 57201011 57202344 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja6g2811 mTERF 2.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2811 K15032 - gmx:102663105 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2811 6 57201011 57202344 Lja6g2811 6 57201011 57202344 ECH