Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2810 ATGTTTGGTGTTCTCAATCGCAGAGCATTGCTCTGCCCAAACCTCAACATCACCATCATCAAAACCCCCTCATTTCTTCACCACTTTTCCTCTTCCAAACAACACTCTTTCACCACCAACTACCTCATCAACAACTTCAACTTCTCCCCTGAAACCGCTTCCACCATCTCCACCCGAGTTCGTCTCACCGACTCACAAAACCCTGACTCAATCCTCGCCTTGTTCAAATCCCACGGTTTCACAAACTCTCAGTTATCTCGCATCATCCAAAGCTACCCTAAGCTTCTTTCCTCCGACCCCAACAAAACCGTTCTTCCCAAATTCAATTTCTTCCTCTCAAAGGGTGCTTCAAATTCTGATCTTGTCAAAATCGTCACTAGAAACCCCTTTGTTTTGCACCTGGGTTTGGAGACTACCATCACCACTTGTTATGATTTCCTCAAAAGATTCTTGGTTTCTGATGAGTCCACTATTCGCTCTCTCAAGTATTGCACTTGCTTGATTTATTCTAAGCACACATCGGTTAATGTTCAAGTGTTGCTTGAGAATGGCGTCCCTGAATCGAAGATCGCGTTCTTACTTCGTAGTTGTGCTTATTCAGCCTGTGAGCAGCCTGATAACTTTAAGAAGGCAGTGGAAGAAATCAAGGAAATGGGATTTAAACCCAACAGTACGGTTTTCATGGTAGCGCTGTCTGCGAAGATGCTGAATGCAATGTGGGAAAGGAAGATTGCTTTGTATAAGAAATGGGGTTGGTCTGAAGAAGTGGTTGTTTCGGCATTCGCGAGATATCCGTGGTGCATGCTGGCATCTGAGGAGAAAATTGATACCATGATGGAGTTTTTGGTCAACCGCATGGGTTGGGACTCTTTGGTGCTTTCCAAAACCCCAATACTCCTTCTGCTGAGTTTGGAGAAAAGAGTTGTTCCCAGGTCTTTTGTCTTGCAATTTCTTCAATCCAGAGGTTTGGTTAAGGATGTTAAATCGGCCACGCCGTTTAGAATTTCTGAGAAGAAATTCTTGCAGAAATTTGTGAATTGCTTTGAGGAGGAGGAAGCTGCTCAGCTCTTGAAGCTGTATGAAGAGAAAAAATGTCGTCCAAGATAA 1107 0.439 MFGVLNRRALLCPNLNITIIKTPSFLHHFSSSKQHSFTTNYLINNFNFSPETASTISTRVRLTDSQNPDSILALFKSHGFTNSQLSRIIQSYPKLLSSDPNKTVLPKFNFFLSKGASNSDLVKIVTRNPFVLHLGLETTITTCYDFLKRFLVSDESTIRSLKYCTCLIYSKHTSVNVQVLLENGVPESKIAFLLRSCAYSACEQPDNFKKAVEEIKEMGFKPNSTVFMVALSAKMLNAMWERKIALYKKWGWSEEVVVSAFARYPWCMLASEEKIDTMMEFLVNRMGWDSLVLSKTPILLLLSLEKRVVPRSFVLQFLQSRGLVKDVKSATPFRISEKKFLQKFVNCFEEEEAAQLLKLYEEKKCRPR* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2810 368 PANTHER CGI-12 PROTEIN-RELATED 31 363 IPR003690 GO:0003690|GO:0006355
Lja6g2810 368 Pfam mTERF 239 341 IPR003690 GO:0003690|GO:0006355
Lja6g2810 368 Pfam mTERF 72 243 IPR003690 GO:0003690|GO:0006355
Lja6g2810 368 Gene3D Transcription termination factor 3, mitochondrial 137 354 IPR038538 -
Lja6g2810 368 PANTHER OS04G0637500 PROTEIN 31 363 - -
Lja6g2810 368 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Lja6g2810 368 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Lja6g2810 368 SMART mt_12 290 324 IPR003690 GO:0003690|GO:0006355
Lja6g2810 368 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Lja6g2810 368 SMART mt_12 158 186 IPR003690 GO:0003690|GO:0006355
Lja6g2810 368 SMART mt_12 191 221 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2810 Lja-Chr6 57195717 57197334 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja6g2810 mTERF 3.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2810 K15032 - gmx:102663105 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2810 6 57195717 57197334 Lja6g2810 6 57195717 57197334 ECH