Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2801 ATGCAAGCAACTCAACCATCACCCACTCATGAAGCTCCTCAGATTTCCCATCAGGCTGACAACCAGCTAAACAAAGAAGATTCAGATAACAGACCTAGCGGGAAGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTGCAGGATTTGGCACCACTAGTGGTGGAAAGGTTCTGAACCATTCTCAAAGTTTCTCCAAAGGGAACTCATCACCAAGAGGCTTTTTGCGGGCCTTAAGCTTCAAAAGAAAAGGAAATGTAACAGATGGCGAAAGAAGCAGCCTCCTTAATCCAGAACCCAAGACATCTGCAGACAATCCTAATATGGCCTCCATATCTGAAGTTCCATGGTCAAGGTGTACTTCTCTTCCCGTTACACCTGCAACAAATTTGTCCCCTGCAGTTTCTACGCCTATTTCCGCAACGACATATAATGAACAGATTAAGCCACATAAAGATGTTGTTCGTGCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTAGTTATTGTAAGATCTGTCTCCTTCTCTACCCGTAATGAACAGGAACAACAAGATATAAATGATGATCAAATAACTCCTGCGCCAGTAGAAAGTGCTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGACGTTTGCGATGAAAGAAATACCTTCAAAATGGAATGCAGTTGCAAAGGTGACCTGACGTTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCTTAAAAGGAAACAAGAAATGTGATGTATGTGGGCAAGAAGTTCAGAATTTACCTGTAACCTTGCTTCGTGTGTCCAGCTCTGTTCGACAGAACAGACAGTCACAGAATCAGCAGAACCTACGTTCAGAGTCAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCCATCATTATAGCAGGACCATTTGCCTTTACCTTGGGCCTCCTGGCATCTATTTTTGCAATCATCCTTGCGATTAAAGAGTATATATGGACATACGCTGCACTTGAGTTCGCACTTGTGGCTATAACTGTGCATATATTTTATAGTATGTTTCACTTGACGGCCATTTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTTCTATGGGCATCAACTATTTGTATATCCAGTATGTCACTTGGAGACTTCAGGTCACACACAATGATAGCCCAGTATGA 1266 0.4202 MQATQPSPTHEAPQISHQADNQLNKEDSDNRPSGKRPDISLQVPPRPAGFGTTSGGKVLNHSQSFSKGNSSPRGFLRALSFKRKGNVTDGERSSLLNPEPKTSADNPNMASISEVPWSRCTSLPVTPATNLSPAVSTPISATTYNEQIKPHKDVVRAKVSRSLSVPGRNVVIVRSVSFSTRNEQEQQDINDDQITPAPVESAADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPVTLLRVSSSVRQNRQSQNQQNLRSESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAGPFAFTLGLLASIFAIILAIKEYIWTYAALEFALVAITVHIFYSMFHLTAIYAILLSSVLGFGISMGINYLYIQYVTWRLQVTHNDSPV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2801 421 MobiDBLite consensus disorder prediction 55 73 - -
Lja6g2801 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 269 IPR013083 -
Lja6g2801 421 PANTHER OS02G0165000 PROTEIN 1 421 - -
Lja6g2801 421 MobiDBLite consensus disorder prediction 90 110 - -
Lja6g2801 421 SMART ringv_2 213 261 IPR011016 GO:0008270
Lja6g2801 421 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Lja6g2801 421 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Lja6g2801 421 SUPERFAMILY RING/U-box 210 264 - -
Lja6g2801 421 MobiDBLite consensus disorder prediction 1 73 - -
Lja6g2801 421 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g2801 421 MobiDBLite consensus disorder prediction 86 110 - -
Lja6g2801 421 PANTHER ZINC FINGER PROTEIN 1 421 - -
Lja6g2801 421 CDD RING_CH-C4HC3_MARCH 214 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2801 Lja-Chr6 57080055 57085509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2801 188 320 C3H Transcription Factor Family AT2G37950 26.056 3.39e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2801 - - gmx:100527094 662.144